View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4928_1D_low_28 (Length: 255)
Name: NF4928_1D_low_28
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_low_28 |
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| [»] scaffold0070 (1 HSPs) |
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| [»] scaffold0466 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 24895401 - 24895160
Alignment:
| Q |
7 |
agactttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatc |
106 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24895401 |
agactttcatttaaattgttattgtcaaatctaacatccctcaagaaagtcatgttgttaggcggtggaattttacatgcatatgtgtaacttttacatc |
24895302 |
T |
|
| Q |
107 |
taagtatcagcgtaatgtccaagttcattattttggggctatttattttttataattaaaattttgattaggagatagtgaccaatgtaaggtcattggg |
206 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24895301 |
taagtatcaacgtaatgtccaagttcattattttggggctatttattttttataattaaaattttgattaggagatagtgaccaatgtaaggtcattggg |
24895202 |
T |
|
| Q |
207 |
aaccaataattccattgaaaagttactataaaattctagtat |
248 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24895201 |
aaccaataatttcattgaaaagttactataaaattctagtat |
24895160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 25628409 - 25628644
Alignment:
| Q |
7 |
agactttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatc |
106 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
25628409 |
agactttcatttaaattattatcgtcaaatctaacacccctcaagaaagtcatattgttaagcaatggagttttacatgcatatgtgtaacttttacatc |
25628508 |
T |
|
| Q |
107 |
taagtatcagcgtaatgtccaagttcattattttggggctatttattttttataattaaaattttgattaggagatagtgaccaatgtaaggtcattggg |
206 |
Q |
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||||||| | ||| |||||| || |||||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
25628509 |
taagtattattgtactgtccagattaattattttagcgctgtttattttttataattaaaattttgattaggagatagagaccaatgtaaggtcattcag |
25628608 |
T |
|
| Q |
207 |
aaccaataattccattgaaaagttactataaaattc |
242 |
Q |
| |
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||||||||||| ||||||||||||| |||||||||| |
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| T |
25628609 |
aaccaataatttcattgaaaagttattataaaattc |
25628644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 25326256 - 25326362
Alignment:
| Q |
7 |
agactttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
25326256 |
agactttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtcgaattttacatgcatatgtgtaacttttaaatc |
25326355 |
T |
|
| Q |
107 |
taagtat |
113 |
Q |
| |
|
||||||| |
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|
| T |
25326356 |
taagtat |
25326362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 25370348 - 25370431
Alignment:
| Q |
14 |
catttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaac |
97 |
Q |
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|
|||||||||||||| || ||||| | || || |||| |||||||||||||||||| |||||||| || ||||| |||||||| |
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| T |
25370348 |
catttaaattgttaacgccaaatttgaccaccttcaaagaagtcatgttgttaagcgatggaatttcacctgcatgtgtgtaac |
25370431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 25395134 - 25395187
Alignment:
| Q |
44 |
ccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaac |
97 |
Q |
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||||||| |||||||||||||||||| |||||||| || ||||| |||||||| |
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| T |
25395134 |
ccctcaaataagtcatgttgttaagcgatggaatttcacctgcatgtgtgtaac |
25395187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 25326366 - 25326406
Alignment:
| Q |
192 |
tgtaaggtcattgggaaccaataattccattgaaaagttac |
232 |
Q |
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|
|||||| |||||| |||||||||||| |||||||||||||| |
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| T |
25326366 |
tgtaagttcattgagaaccaataatttcattgaaaagttac |
25326406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 25806481 - 25806525
Alignment:
| Q |
53 |
aagtcatgttgttaagcggtggaattttacatgcatatgtgtaac |
97 |
Q |
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|||||| |||||||||||||||||||| || ||||| |||||||| |
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| T |
25806481 |
aagtcaggttgttaagcggtggaatttcacctgcatgtgtgtaac |
25806525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 25811511 - 25811555
Alignment:
| Q |
53 |
aagtcatgttgttaagcggtggaattttacatgcatatgtgtaac |
97 |
Q |
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|||||| |||||||||||||||||||| || ||||| |||||||| |
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| T |
25811511 |
aagtcaggttgttaagcggtggaatttcacctgcatgtgtgtaac |
25811555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 25824205 - 25824249
Alignment:
| Q |
53 |
aagtcatgttgttaagcggtggaattttacatgcatatgtgtaac |
97 |
Q |
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|||||| |||||||||||||||||||| || ||||| |||||||| |
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| T |
25824205 |
aagtcaggttgttaagcggtggaatttcacctgcatgtgtgtaac |
25824249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 31741 - 31500
Alignment:
| Q |
7 |
agactttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatc |
106 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31741 |
agactttcatttaaattgttatcgtcaaatctaacatccctaaaaaaagttatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatc |
31642 |
T |
|
| Q |
107 |
taagtatcagcgtaatgtccaagttcattattttggggctatttattttttataattaaaattttgattaggagatagtgaccaatgtaaggtcattggg |
206 |
Q |
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||||||| | ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | |
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| T |
31641 |
taagtattattgtactgtccaagttaattattttggggctatttattttttataattaaaattttgattagaagatagagaccaatgtaaggtcattgag |
31542 |
T |
|
| Q |
207 |
aaccaataattccattgaaaagttactataaaattctagtat |
248 |
Q |
| |
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||||||||||| ||||||||||||| |||||||||| ||||| |
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| T |
31541 |
aaccaataatttcattgaaaagttattataaaattcaagtat |
31500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 604 - 498
Alignment:
| Q |
7 |
agactttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatc |
106 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
604 |
agactttcatttaaattgttatcgtcaaatctaacttccctcaagaaagtcatatcgttaagcggtggaatattacatgcatatgtgtaacttttacatc |
505 |
T |
|
| Q |
107 |
taagtat |
113 |
Q |
| |
|
||||||| |
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|
| T |
504 |
taagtat |
498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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