View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928_1D_low_29 (Length: 253)

Name: NF4928_1D_low_29
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928_1D_low_29
NF4928_1D_low_29
[»] chr7 (2 HSPs)
chr7 (1-231)||(1516623-1516853)
chr7 (15-133)||(36515877-36515995)
[»] chr5 (2 HSPs)
chr5 (57-133)||(24916352-24916427)
chr5 (15-133)||(24992244-24992362)
[»] chr3 (3 HSPs)
chr3 (64-133)||(41943302-41943370)
chr3 (8-92)||(43581037-43581121)
chr3 (57-133)||(52167290-52167365)
[»] chr6 (1 HSPs)
chr6 (57-133)||(26210827-26210902)
[»] chr2 (1 HSPs)
chr2 (62-133)||(38292038-38292108)
[»] scaffold0009 (1 HSPs)
scaffold0009 (57-133)||(216981-217056)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 1516623 - 1516853
Alignment:
Q  1 gtcgtaatttgatcatgtgtactatttacataacctattctgatcatatttttgaataatttataaagacaaatattaatatataagatgttattcgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1516623 gtcgtaatttgatcatgtgtactatttacataacctattctgatcatatttttgaataatttataaagacaaatattaatatataagatgttattcgatt 1516722  T
Q  101 tcgtctcaatgaataatttcgaaatatcaaattctataattttgtaaagataaaaattatgtattggtatgtgtaaaatgatcaactacgacctttattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1516723 tcgtctcaatgaataatttcgaaatatcaaattctataattttgtaaagataaaaattatgtattggtatgtgtaaaatgatcaactacgacctttattt 1516822  T
Q  201 aggaacatggagtaacacccttagaatcaat 231  Q
    |||||||||||||||||||||||||||||||    
T  1516823 aggaacatggagtaacacccttagaatcaat 1516853  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 36515877 - 36515995
Alignment:
Q  15 atgtgtactatttacataacctattctgatcatatttttgaat-aatttataaagacaaatattaatatataagatgttattcgatttcgtctcaatgaa 113  Q
    |||||||||||| ||| ||| || | | | ||||||||| ||| ||| |||||| |||||| ||| ||||||||||||| ||| |||| |||||||||||    
T  36515877 atgtgtactattcacacaacttactttaaccatattttttaatcaatatataaatacaaatgttagtatataagatgttgttcaattt-gtctcaatgaa 36515975  T
Q  114 taatttcgaaatatcaaatt 133  Q
    |  |||| ||||||||||||    
T  36515976 tgttttcaaaatatcaaatt 36515995  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 24916427 - 24916352
Alignment:
Q  57 taatttataaagacaaatattaatatataagatgttattcgatttcgtctcaatgaataatttcgaaatatcaaatt 133  Q
    ||||||||||| ||||||||||  |||||||||||| || ||||| ||||||||||||| |||| ||||||||||||    
T  24916427 taatttataaatacaaatattagcatataagatgttgtttgattt-gtctcaatgaatattttcaaaatatcaaatt 24916352  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 24992362 - 24992244
Alignment:
Q  15 atgtgtactatttacataacctattctgatcatatttttgaa-taatttataaagacaaatattaatatataagatgttattcgatttcgtctcaatgaa 113  Q
    ||||| |||||| ||||| | || | ||| ||||||||| || ||||||||||| ||||||||||  |||||||||||| || ||||| |||||||||||    
T  24992362 atgtgcactattcacatagcttactttgaccatattttttaactaatttataaatacaaatattagcatataagatgttgtttgattt-gtctcaatgaa 24992264  T
Q  114 taatttcgaaatatcaaatt 133  Q
    || |||| ||||| ||||||    
T  24992263 tattttcaaaataccaaatt 24992244  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 41943302 - 41943370
Alignment:
Q  64 taaagacaaatattaatatataagatgttattcgatttcgtctcaatgaataatttcgaaatatcaaatt 133  Q
    |||| |||||| ||||||||||||||||| || ||||| ||||||||||||| |||  ||||||||||||    
T  41943302 taaatacaaatgttaatatataagatgttgtttgattt-gtctcaatgaatatttttaaaatatcaaatt 41943370  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 43581121 - 43581037
Alignment:
Q  8 tttgatcatgtgtactatttacataacctattctgatcatatttttgaataatttataaagacaaatattaatatataagatgtt 92  Q
    ||||| ||| ||||||||| |||||||||| | |||| || ||||| | |||| ||||||||||||| ||  ||||||| |||||    
T  43581121 tttgaccatatgtactattcacataacctactttgataattttttttactaatatataaagacaaatgttggtatataaaatgtt 43581037  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 52167290 - 52167365
Alignment:
Q  57 taatttataaagacaaatattaatatataagatgttattcgatttcgtctcaatgaataatttcgaaatatcaaatt 133  Q
    |||| |||||| |||||||||||||| ||||||||| || ||||| |||||||| ||||  ||| |||||| |||||    
T  52167290 taatatataaatacaaatattaatatgtaagatgttgtttgattt-gtctcaattaatatattcaaaatattaaatt 52167365  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 26210827 - 26210902
Alignment:
Q  57 taatttataaagacaaatattaatatataagatgttattcgatttcgtctcaatgaataatttcgaaatatcaaatt 133  Q
    |||||||||||||||||   || ||||||||||||| || |||| |||||| ||||||| |||| ||||||||||||    
T  26210827 taatttataaagacaaaatatattatataagatgttgttggatt-cgtctcgatgaatattttcaaaatatcaaatt 26210902  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 38292038 - 38292108
Alignment:
Q  62 tataaagacaaatattaatatataagatgttattcgatttcgtctcaatgaataatttcgaaatatcaaatt 133  Q
    |||||| |||||| |||| || ||||||||| || ||||| ||||||||||||| |||| ||||||||||||    
T  38292038 tataaatacaaatgttaacatgtaagatgttgtttgattt-gtctcaatgaatattttcaaaatatcaaatt 38292108  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 217056 - 216981
Alignment:
Q  57 taatttataaagacaaatattaatatataagatgttattcgatttcgtctcaatgaataatttcgaaatatcaaatt 133  Q
    |||| |||||| |||||| |||  |||||||||||| || ||||| ||||||||||||| |||| |||| |||||||    
T  217056 taatatataaatacaaatgttagcatataagatgttgtttgattt-gtctcaatgaatattttcaaaatgtcaaatt 216981  T

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