View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4928_1D_low_31 (Length: 253)
Name: NF4928_1D_low_31
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_low_31 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 31527506 - 31527750
Alignment:
| Q |
9 |
ggacatcaatggacagaacaagttgtagtatacaagtccatgttatatgaaaccaccatggaaattctcccattctatatgcatcaactgcaatgtaatt |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31527506 |
ggacagcaatggacagaacaagttgtagtatacaagtccatgttatatgaaaccaccatggaaattctcccattctatatgcatcaactgcaatgtaatt |
31527605 |
T |
|
| Q |
109 |
cacaatttcaccggccgagtgtcttatctttcccgagctagaaagctttagctgcttctcataaactgccaccatcagagctgatctcattttcattcct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31527606 |
cacaatttcaccggccgagtgtcttatctttcccgagctagaaagctttagctgcttctcataaactgccaccatcagagctgatctcattttcattcct |
31527705 |
T |
|
| Q |
209 |
aacctccttgagttaaaaaaccaatgtctctgggaaaaagactcg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31527706 |
aacctccttgagttaaaaaaccaatgtctctgggaaaaagactcg |
31527750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 5305588 - 5305351
Alignment:
| Q |
15 |
caatggacagaacaagttgtagtatacaagtccatgttatatgaaaccaccatggaaattctcccattctatatgcatcaactgcaatgtaattcacaat |
114 |
Q |
| |
|
||||||| ||||||||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5305588 |
caatggaaagaacaagttgcaatgcacaagtccatgttatatgaaaccaccatgggaattctcccattctatatgcatcaactacaatgtaattcacaat |
5305489 |
T |
|
| Q |
115 |
ttcaccggccgagtgtcttatctttcccgagctagaaagctttagctgcttctcataaactgccaccatcagagctgatctcattttcattcctaacctc |
214 |
Q |
| |
|
||| |||||| |||||||| | || ||| ||||||||||||||||||||| | ||||||||| |||||| |||||||||||||||||||||| ||||| |
|
|
| T |
5305488 |
ttcgccggccaagtgtcttgttcttgccgggctagaaagctttagctgcttttgataaactgctgccatcaaagctgatctcattttcattcctgacctc |
5305389 |
T |
|
| Q |
215 |
cttgagttaaaaaaccaatgtctctgggaaaaagactc |
252 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
5305388 |
cttgagttgaaaaaccaatgtctctgagacaaagactc |
5305351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 53 - 237
Target Start/End: Original strand, 5284053 - 5284237
Alignment:
| Q |
53 |
atatgaaaccaccatggaaattctcccattctatatgcatcaactgcaatgtaattcacaatttcaccggccgagtgtcttatctttcccgagctagaaa |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| |
|
|
| T |
5284053 |
atatgaaaccaccatggaaattctcccattctatatgcatcaactacaatgtaattcacaatttcaccggccgagtgtcttgtccttgccgagctagaaa |
5284152 |
T |
|
| Q |
153 |
gctttagctgcttctcataaactgccaccatcagagctgatctcattttcattcctaacctccttgagttaaaaaaccaatgtct |
237 |
Q |
| |
|
||||||| ||||| | ||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5284153 |
gctttagttgcttttgataaattgccaccataagagctgatctcattttcattcctgacctccttgagttaaaaaaccaatgtct |
5284237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 42 - 237
Target Start/End: Complemental strand, 15124810 - 15124615
Alignment:
| Q |
42 |
aagtccatgttatatgaaaccaccatggaaattctcccattctatatgcatcaactgcaatgtaattcacaatttcaccggccgagtgtcttatctttcc |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||| ||||||||||| || || | |
|
|
| T |
15124810 |
aagtccatgttatatgaaaccaccatggaaattctcccattctataagaatcaactgcaatgtaattcacaatttctccgaccgagtgtcttttccttgc |
15124711 |
T |
|
| Q |
142 |
cgagctagaaagctttagctgcttctcataaactgccaccatcagagctgatctcattttcattcctaacctccttgagttaaaaaaccaatgtct |
237 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
15124710 |
cgagctagaaagctttagctgcttttgataaactgctaccattagagctgatctcattttcatacctgacctccttgagttaaaaaaccaatgtct |
15124615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 40 - 252
Target Start/End: Original strand, 5291535 - 5291747
Alignment:
| Q |
40 |
acaagtccatgttatatgaaaccaccatggaaattctcccattctatatgcatcaactgcaatgtaattcacaatttcaccggccgagtgtcttatcttt |
139 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
5291535 |
acaagtccatgttgtatgaaaccaccatggaaattctcccattctgtatgcatcaactgcaatgtaattcacaatttcaccggccgagtgtctctgcctt |
5291634 |
T |
|
| Q |
140 |
cccgagctagaaagctttagctgcttctcataaactgccaccatcagagctgatctcattttcattcctaacctccttgagttaaaaaaccaatgtctct |
239 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| || | |
|
|
| T |
5291635 |
gccgagctagaaagctttaactgctttcggtaaaccgccaccataagagctgatctcattttcattcctgacctccttgagttaaaaaaccaatgccttt |
5291734 |
T |
|
| Q |
240 |
gggaaaaagactc |
252 |
Q |
| |
|
| || |||||||| |
|
|
| T |
5291735 |
gagataaagactc |
5291747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 5312798 - 5312579
Alignment:
| Q |
15 |
caatggacagaacaagttgtagtatacaagtccatgttatatgaaaccaccatggaaattctcccattctatatgcatcaactgcaatgtaattcacaat |
114 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
5312798 |
caatggacagaacaagttgcaatgcacaagtccatgttatatgaaaccaccatggaaattctcccattctatatgcatcaattgcaatgtaattcaaaat |
5312699 |
T |
|
| Q |
115 |
ttcaccggccgagtgtcttatctttcccgagctagaaagctttagctgcttctcataaactgccaccatcagagctgatctcattttcattcctaacctc |
214 |
Q |
| |
|
||| |||| ||||||||| || || || ||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
5312698 |
ttcgccggttgagtgtcttgtccttgccatgcttgaaagctttagctgctttcgataaactgccaccatcaaagctgatctcattttcattcctgacctc |
5312599 |
T |
|
| Q |
215 |
cttgagttaaaaaaccaatgtc |
236 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
5312598 |
cttgag--aaaaaaccaatgtc |
5312579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 14950823 - 14951052
Alignment:
| Q |
9 |
ggacatcaatggacagaacaagttgtagtatacaagtccatgttatatgaaaccaccatggaaattctcccattctatatgcatcaactgcaatgtaatt |
108 |
Q |
| |
|
||||| |||| || ||||||||||| | || | ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14950823 |
ggacaccaatagaaagaacaagttgcaatacagaagtccatgccatatgaaaccaccatggaaattctcccattctataagcatcaactgcaatgtaatt |
14950922 |
T |
|
| Q |
109 |
cacaatttcaccggccgagtgtcttatctttcccgagctagaaagctttagctgcttctcataaactgccaccatcagagctgatctcattttcattcct |
208 |
Q |
| |
|
||||||||| ||||||||||| || ||| || ||||||| ||||||||||||||||| | ||||||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
14950923 |
cacaatttctccggccgagtgcctcatccttgccgagcttgaaagctttagctgcttttgataaactgctaccattagagctgatctcattttcatacct |
14951022 |
T |
|
| Q |
209 |
aacctc-cttgagttaaaaaaccaatgtct |
237 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
14951023 |
gacctcttttgagttaaaaaaccaatgtct |
14951052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University