View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928_1D_low_34 (Length: 249)

Name: NF4928_1D_low_34
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928_1D_low_34
NF4928_1D_low_34
[»] chr3 (11 HSPs)
chr3 (91-243)||(23385846-23385999)
chr3 (41-229)||(23462850-23463034)
chr3 (91-229)||(23404231-23404370)
chr3 (40-243)||(23471946-23472150)
chr3 (89-243)||(23351508-23351663)
chr3 (38-235)||(23439418-23439617)
chr3 (129-242)||(23478112-23478226)
chr3 (129-242)||(23498561-23498675)
chr3 (141-242)||(23446812-23446913)
chr3 (141-212)||(23453614-23453685)
chr3 (75-122)||(23498713-23498760)
[»] scaffold0201 (1 HSPs)
scaffold0201 (100-233)||(10991-11125)


Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 91 - 243
Target Start/End: Complemental strand, 23385999 - 23385846
Alignment:
Q  91 ctaggttttgtttctcttttaatcaacactcatgcttgtttatttcttga-acagaatcttgtgaatataaaactactttcgcttgaatgctccaaagat 189  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||  |||||||||||||||| ||| | |||||| |||||||| ||||||||||    
T  23385999 ctaggttttgtttctcttttaatcaacactcatggatgtttatttcttgttacagaatcttgtgaatctaagagtactttggcttgaatcctccaaagat 23385900  T
Q  190 ctgattgagatcccagacttatcaagggctagaaatcttgaaagagtacatctc 243  Q
    ||||||||||||||||||||||| ||||||| ||||||||| ||| ||||||||    
T  23385899 ctgattgagatcccagacttatctagggctataaatcttgacagaatacatctc 23385846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 41 - 229
Target Start/End: Complemental strand, 23463034 - 23462850
Alignment:
Q  41 ttcacaaaattgcagcagagctaggatggcattcctctatttatgcttagctaggttttgtttctcttttaatcaacactcatgcttgtttatttcttga 140  Q
    ||||| ||||||||||||||||||||||   || ||||  ||||| ||| ||||||||||||||||||||||||||||||||||  |||||||||||||     
T  23463034 ttcactaaattgcagcagagctaggatg---tttctct--ttatgtttaactaggttttgtttctcttttaatcaacactcatggatgtttatttcttgt 23462940  T
Q  141 -acagaatcttgtgaatataaaactactttcgcttgaatgctccaaagatctgattgagatcccagacttatcaagggctagaaatcttg 229  Q
     |||||||||||||||| ||| |  ||||| ||||  || ||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  23462939 tacagaatcttgtgaatctaagaacactttggcttcgatcctccaaagatctgattgagatcccagacttatctagggctacaaatcttg 23462850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 91 - 229
Target Start/End: Complemental strand, 23404370 - 23404231
Alignment:
Q  91 ctaggttttgtttctcttttaatcaacactcatgcttgtttatttcttga-acagaatcttgtgaatataaaactactttcgcttgaatgctccaaagat 189  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||  |||||||||||||||| ||| |  ||||| |||||||| ||||||||||    
T  23404370 ctaggttttgtttctcttttaatcaacactcatggatgtttatttcttgttacagaatcttgtgaatctaagaacactttggcttgaatcctccaaagat 23404271  T
Q  190 ctgattgagatcccagacttatcaagggctagaaatcttg 229  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  23404270 ctgattgagatcccagacttatctagggctacaaatcttg 23404231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 23472150 - 23471946
Alignment:
Q  40 attcacaaaattgcagcagagctaggatggcattcctctatttatgcttagctaggttttgtttctcttttaatcaacactcatgcttgtttatttcttg 139  Q
    |||||||||| |||||||||| ||| ||||||| | ||| ||||| |||| |||||||||||||||||||||||| ||||| |||| |||||||||||||    
T  23472150 attcacaaaaatgcagcagagttagtatggcatgcttctgtttattcttaactaggttttgtttctcttttaatcgacactaatgcatgtttatttcttg 23472051  T
Q  140 -aacagaatcttgtgaatataaaactactttcgcttgaatgctccaaagatctgattgagatcccagacttatcaagggctagaaatcttgaaagagtac 238  Q
      |||||||||||||||| |||    | ||   ||| | | ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| |||||    
T  23472050 ttacagaatcttgtgaatctaatcacatttagccttaattactccaaagatctgattgagatcccaaacttatctagggctacaaatcttgaaaaagtac 23471951  T
Q  239 atctc 243  Q
    |||||    
T  23471950 atctc 23471946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 23351663 - 23351508
Alignment:
Q  89 agctaggttttgtttctcttttaatcaacactcatgcttgtttatttcttga-acagaatcttgtgaatataaaactactttcgcttgaatgctccaaag 187  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||   |||||||||||||||| ||| |  | ||  |||| ||| ||||||||    
T  23351663 agctaggttttgtttctcttttaatcaaaactcatgcatgtttatttcttattacagaatcttgtgaatctaagatcaattatgcttcaatcctccaaag 23351564  T
Q  188 atctgattgagatcccagacttatcaagggctagaaatcttgaaagagtacatctc 243  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||    
T  23351563 atctgattgagatcccagacttatctagggctacaaatcttgaaagagtatatctc 23351508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 38 - 235
Target Start/End: Complemental strand, 23439617 - 23439418
Alignment:
Q  38 ctattcacaaaattgcagcagagctaggatggcattcctctatttatgcttagctaggttttgtttctcttttaatcaacactcatgcttgtttatttct 137  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||| |||| |||||||||||    
T  23439617 ctattcacaaaattgtagcagagctaggatgacatgcctctatttattcttaactaggttttgtttctcttttaatcaacacttatgcatgtttatttct 23439518  T
Q  138 tg-aacagaatcttgt-gaatataaaactactttcgcttgaatgctccaaagatctgattgagatcccagacttatcaagggctagaaatcttgaaagag 235  Q
    ||  ||||||||||||  ||| |||    | | |  ||| | | |||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||    
T  23439517 tgttacagaatcttgtaaaatctaatcacaatctgccttaattactccaaagatctgattgagatccccgacttatctagggctacaaatcttggaagag 23439418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 23478226 - 23478112
Alignment:
Q  129 tttatttcttga-acagaatcttgtgaatataaaactactttcgcttgaatgctccaaagatctgattgagatcccagacttatcaagggctagaaatct 227  Q
    |||||||||||  |||||||||||||||| ||||  |||||| |||||||| ||||||| ||||||||||||||||||||||||| | ||||| ||||||    
T  23478226 tttatttcttgttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagacttatctaaggctacaaatct 23478127  T
Q  228 tgaaagagtacatct 242  Q
    | | |||||| ||||    
T  23478126 tcatagagtatatct 23478112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 23498675 - 23498561
Alignment:
Q  129 tttatttcttga-acagaatcttgtgaatataaaactactttcgcttgaatgctccaaagatctgattgagatcccagacttatcaagggctagaaatct 227  Q
    |||||||||||  |||||||||||||||| ||||  |||||| |||||||| ||||||| ||||||||||||||||||||||||| | ||||| ||||||    
T  23498675 tttatttcttgttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagacttatctaaggctacaaatct 23498576  T
Q  228 tgaaagagtacatct 242  Q
    | | |||||| ||||    
T  23498575 tcatagagtatatct 23498561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 23446913 - 23446812
Alignment:
Q  141 acagaatcttgtgaatataaaactactttcgcttgaatgctccaaagatctgattgagatcccagacttatcaagggctagaaatcttgaaagagtacat 240  Q
    |||||||||||||||| ||||  |||||| |||||||| ||||||| ||||||||||||||||||||||||| | ||||| ||||||| | |||||| ||    
T  23446913 acagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagacttatctaaggctacaaatcttcatagagtatat 23446814  T
Q  241 ct 242  Q
    ||    
T  23446813 ct 23446812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 23453685 - 23453614
Alignment:
Q  141 acagaatcttgtgaatataaaactactttcgcttgaatgctccaaagatctgattgagatcccagacttatc 212  Q
    |||||||||||||||| ||||  ||||   |||||||| |||||||||||||||||||||||||||||||||    
T  23453685 acagaatcttgtgaatctaaacatactccggcttgaatcctccaaagatctgattgagatcccagacttatc 23453614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 23498760 - 23498713
Alignment:
Q  75 ctctatttatgcttagctaggttttgtttctcttttaatcaacactca 122  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||||    
T  23498760 ctctatttatgcttaattaggtttagtttctcttttaatcaacactca 23498713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 100 - 233
Target Start/End: Complemental strand, 11125 - 10991
Alignment:
Q  100 gtttctcttttaatcaacactcatgcttgtttatttcttg-aacagaatcttgtgaatataaaactactttcgcttgaatgctccaaagatctgattgag 198  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||| ||| | | |||||||||  |  ||| |||||||| ||||||    
T  11125 gtttctcttttaatcaacactcatgcttgtttatttcttgttacaggatcttgtgaatctaacagttctttcgcttccaaactctaaagatctcattgag 11026  T
Q  199 atcccagacttatcaagggctagaaatcttgaaag 233  Q
     || |||||||||| ||||||| ||||||| ||||    
T  11025 ctctcagacttatccagggctacaaatcttcaaag 10991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University