View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4928_1D_low_36 (Length: 246)
Name: NF4928_1D_low_36
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_low_36 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 55263150 - 55262929
Alignment:
| Q |
3 |
ttggtgttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatttgaccttgaagcttaaa |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
55263150 |
ttggagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatatgaccttgaagcttaaa |
55263051 |
T |
|
| Q |
103 |
ctagatttcttcgtgtttctgtaccatcgatggtaaaatatgtttcatgtgtctataacagattgccattggtactgatgatgtctacaagagtgctgat |
202 |
Q |
| |
|
|||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55263050 |
ctagctttcttcgtgtttatgtaccattgatggtaaaatatgtttcatgtgtctataacagattgccattggtactgatgatgtctacaagagtgctgat |
55262951 |
T |
|
| Q |
203 |
gtagtcaacgtagtcacacaag |
224 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
55262950 |
gtagtcaacctagtcacacaag |
55262929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 55270014 - 55269801
Alignment:
| Q |
3 |
ttggtgttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatttgaccttgaagcttaaa |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
55270014 |
ttggagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatatgaccttgaagcttaaa |
55269915 |
T |
|
| Q |
103 |
ctagatttcttcgtgtttctgtaccatcgatggtaaaatatgtttcatgtgtctataacagattgccattggtactgatgatgtctacaagagtgctgat |
202 |
Q |
| |
|
|||| ||||| || ||||| | | ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
55269914 |
ctagctttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacagattgctgttggtactgatgatgtctacaagagtgctgat |
55269815 |
T |
|
| Q |
203 |
gtagtcaacgtagt |
216 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
55269814 |
gtagtcaacctagt |
55269801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 8301166 - 8301107
Alignment:
| Q |
10 |
tgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagtt |
69 |
Q |
| |
|
|||||||||| ||||||||||| |||||| | ||||||| |||||||||||||||||||| |
|
|
| T |
8301166 |
tgacatataactatggtgtcactgaatacaccaagggaaatgcttatgcacaggttagtt |
8301107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University