View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_1D_low_37 (Length: 246)
Name: NF4928_1D_low_37
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 23776586 - 23776751
Alignment:
| Q |
3 |
gaacaggaaatcggtgaggtggagagcaaacttgtgaaaacggtagcgacagaaataatgcgattgaagacttggaggttaaccgattggaaaaaattga |
102 |
Q |
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| T |
23776586 |
gaacaggaaaccggtgaggtggagagcaaacttgtgaaaacgacaacaacataaataatgcgattgaagacttggaggttaaccgattggaagaaattga |
23776685 |
T |
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| Q |
103 |
gaaaacaatcgatgtgaagaaacagtacggtggtaaagtatcagaccctgtgattacgttgttggc |
168 |
Q |
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| T |
23776686 |
gaaaacaagcgatgtgaagaaacaatacggcggtaaagtatcagaccctgtgattacgttgttggc |
23776751 |
T |
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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 2618800 - 2618877
Alignment:
| Q |
162 |
tgttggcccaactctaagtgaagtgtgtgactttgtttgcaagaatggggacaaattacttggtggttcctgcaaaaa |
239 |
Q |
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| T |
2618800 |
tgttggcccaactctaagtgaagtgtgtgactttgtttgcaagaatggggacaaattactaggtggttcctgcaaaaa |
2618877 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 32298418 - 32298347
Alignment:
| Q |
98 |
attgagaaaacaatcgatgtgaagaaa-cagtacggtggtaaagtatcagaccctgtgattacgttgttggc |
168 |
Q |
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| T |
32298418 |
attgacaaaacaagcgatgtgaaaaaaacaatacggcggtaaagtatcagaccatgtgattacgttgttggc |
32298347 |
T |
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