View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4928_1D_low_4 (Length: 451)
Name: NF4928_1D_low_4
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 143 - 430
Target Start/End: Complemental strand, 42516684 - 42516400
Alignment:
| Q |
143 |
ctttggtttgcaatggatagaaaaactatattttgagtaaacgcttaagtgtctgtttagtagagcgtttttcactccccaaaccacacacgtttccgca |
242 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| ||||| ||| |
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| T |
42516684 |
ctttggtttgcaatggatagaaaaactatactttgagtaaacacttaagcgtctgtttagtaaagcgtttttcactccccaaaccac----gtttctgca |
42516589 |
T |
|
| Q |
243 |
tcctaacgccgtttccaccttttctatcatgtttgggaaagattaaaactgaatttgaaacgccattttcttttccaaacgcgggttgaactgaagctgc |
342 |
Q |
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||||||||| ||||||| ||||||||||||||||| |||||||||||| || || ||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
42516588 |
tcctaacgctgtttccatcttttctatcatgtttgagaaagattaaaattggatctgaaacgccgttttcttttccaaatgcgggttgaactgaagctgc |
42516489 |
T |
|
| Q |
343 |
aattccaagcttctgtgtttttagaatcaattatgcagaagccccaaattcatttccagttttacccctgt-ttttctgatgcgttttc |
430 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
42516488 |
aattccaagcttctgcgtttttagaatcaattatgcagaagccccaaatttatttccagttttacccctgttttttctgatgcgttttc |
42516400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 193 - 430
Target Start/End: Complemental strand, 7473403 - 7473170
Alignment:
| Q |
193 |
gtctgtttagtagagcgtttttcactccccaaaccacacacgtttccgcatcctaacgccgtttccaccttttctatcatgtttgggaaagattaaaact |
292 |
Q |
| |
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|||||||| |||||||||||||| ||||| ||||||| |||||||| || ||||| |||||| ||||||| ||||||||| |||||||||||||| |
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| T |
7473403 |
gtctgtttggtagagcgtttttcgctccc-aaaccac----gtttccgcctcaaaacgcggtttccgtcttttctgtcatgtttgagaaagattaaaact |
7473309 |
T |
|
| Q |
293 |
gaatttgaaacgc-cattttcttttccaaacgcgggttgaactgaagctgcaattccaagcttctgtgtttttagaatcaattatgcagaagccccaaat |
391 |
Q |
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| T |
7473308 |
ggatctgaaaagtacgttttcttttccaaacgcgggttgaattgaagctgcaatttcaagcttctgggtttttagaatcaattctgcataagctccaaat |
7473209 |
T |
|
| Q |
392 |
tcatttccagttttacccctgtttttctgatgcgttttc |
430 |
Q |
| |
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|| ||||||||||||||||||||||||| |||||||||| |
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| T |
7473208 |
tcttttccagttttacccctgtttttctaatgcgttttc |
7473170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 42516826 - 42516749
Alignment:
| Q |
1 |
ttaatctcaacgtgttaagttcgaattccctcgtatggttgtaaaatgaccaacattactgtctttacgttataaaag |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
42516826 |
ttaatctcaacgtgttaagttcgaattccctcgtatggttgtaaaatgaccaacattaccgtctttaagttataaaag |
42516749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 193 - 430
Target Start/End: Original strand, 9446960 - 9447193
Alignment:
| Q |
193 |
gtctgtttagtagagcgtttttcactccccaaaccacacacgtttccgcatcctaacgccgtttccaccttttctatcatgtttgggaaagattaaaact |
292 |
Q |
| |
|
|||||||| |||||| ||||||| || ||||||| || |||||| ||||||||| ||||||| ||||||| |||||||||||||||||||||| | |
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| T |
9446960 |
gtctgtttggtagagtgtttttcgctacccaaacgac----gtttccatatcctaacgttgtttccatcttttctgtcatgtttgggaaagattaaaatt |
9447055 |
T |
|
| Q |
293 |
gaatttgaaacgccattttcttttccaaacgcgggttgaactgaagctgcaattccaagcttctgtgtttttagaatcaattatgcagaagccccaaatt |
392 |
Q |
| |
|
| || |||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||| |
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| T |
9447056 |
ggatctgaaacaccgtttccttttccaaacgcgggttgaactgaagctgcaattccaagcttctgcgtttttagaatcaatcatgaagaagccccaaatt |
9447155 |
T |
|
| Q |
393 |
catttccagttttacccctgtttttctgatgcgttttc |
430 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||||| |
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| T |
9447156 |
catttccagttttacctcggtttttctgatgtgttttc |
9447193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 193 - 430
Target Start/End: Original strand, 32453917 - 32454150
Alignment:
| Q |
193 |
gtctgtttagtagagcgtttttcactccccaaaccacacacgtttccgcatcctaacgccgtttccaccttttctatcatgtttgggaaagattaaaact |
292 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||||| |||||||| || ||||| |||| || ||||||| |||||||||||||||||||||||| |
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| T |
32453917 |
gtctgtttggtagagcgtttttcgctccc-aaaccac----gtttccgcctcaaaacgcggttttcatcttttctgtcatgtttgggaaagattaaaact |
32454011 |
T |
|
| Q |
293 |
gaatttgaaacgc-cattttcttttccaaacgcgggttgaactgaagctgcaattccaagcttctgtgtttttagaatcaattatgcagaagccccaaat |
391 |
Q |
| |
|
| || ||||| | | ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| ||||||||||| |
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| T |
32454012 |
ggatctgaaaagtacgttttcttttccaaacgcgggttgaactgaagctgcaatttcaagcttctggctttttagaatcaattctgcataagccccaaat |
32454111 |
T |
|
| Q |
392 |
tcatttccagttttacccctgtttttctgatgcgttttc |
430 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||||| |
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| T |
32454112 |
tcttttccaattttacccctgtttttctgatgcgttttc |
32454150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 261 - 430
Target Start/End: Original strand, 44926290 - 44926460
Alignment:
| Q |
261 |
cttttctatcatgtttgggaaagattaaaactgaatttgaaacgc-cattttcttttccaaacgcgggttgaactgaagctgcaattccaagcttctgtg |
359 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| || ||||| | | ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
44926290 |
cttttctgtcatgtttgggaaagattaaaactggatctgaaaagtacgttttcttttccaaacgcgggttgaactgaagctgcaatttcaagcttctggc |
44926389 |
T |
|
| Q |
360 |
tttttagaatcaattatgcagaagccccaaattcatttccagttttacccctgtttttctgatgcgttttc |
430 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
44926390 |
tttttagaatcaattctgcataagccccaaattcttttccagttttacccctgtttttctgatgcgttttc |
44926460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 261 - 430
Target Start/End: Complemental strand, 43782172 - 43782002
Alignment:
| Q |
261 |
cttttctatcatgtttgggaaagattaaaactgaatttgaaacgc-cattttcttttccaaacgcgggttgaactgaagctgcaattccaagcttctgtg |
359 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| || ||||| | | ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
43782172 |
cttttctgtcatgtttgggaaagattaaaactggatctgaaaagtacgttttcttttccaaacgcgggttgaactgaagctgcaatttcaagcttctggc |
43782073 |
T |
|
| Q |
360 |
tttttagaatcaattatgcagaagccccaaattcatttccagttttacccctgtttttctgatgcgttttc |
430 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43782072 |
tttttagaatcaattctgcataagccccaaattcttttccagttttacccctgtttttctgatgcgttttc |
43782002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 356
Target Start/End: Original strand, 15602794 - 15602888
Alignment:
| Q |
263 |
tttctatcatgtttgggaaagattaaaactgaatttgaaa-cgccattttcttttccaaacgcgggttgaactgaagctgcaattccaagcttct |
356 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || ||||| | | |||||||||||||||||| |||| ||||||||| ||||| ||||||||| |
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|
| T |
15602794 |
tttctatcatgtttgggtaagatgaaaaccatatctgaaaacaacgttttcttttccaaacgcgagttggactgaagctacaatttcaagcttct |
15602888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 430
Target Start/End: Complemental strand, 2175626 - 2175563
Alignment:
| Q |
367 |
aatcaattatgcagaagccccaaattcatttccagttttacccctgtttttctgatgcgttttc |
430 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||||| ||||||| | ||| |||| ||||||||| |
|
|
| T |
2175626 |
aatcaattctgcaaaagccccaaatttatttccagctttacccttttttatctggtgcgttttc |
2175563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 193 - 430
Target Start/End: Original strand, 13738569 - 13738802
Alignment:
| Q |
193 |
gtctgtttagtagagcgtttttcactccccaaaccacacacgtttccgcatcctaacgccgtttccaccttttctatcatgtttgggaaagattaaaact |
292 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||||| ||||||| || ||||| |||| | ||||||| |||||||||||||||||||||||| |
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|
| T |
13738569 |
gtctgtttggtagagcgtttttcgctccc-aaaccac----gtttccgtctcaaaacgcggttttcgtcttttctgtcatgtttgggaaagattaaaact |
13738663 |
T |
|
| Q |
293 |
gaatttgaaacgc-cattttcttttccaaacgcgggttgaactgaagctgcaattccaagcttctgtgtttttagaatcaattatgcagaagccccaaat |
391 |
Q |
| |
|
| || ||||| | | ||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| |||| ||||||||||| |
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|
| T |
13738664 |
ggatctgaaaagtacgttttcttttccaaacgcaggttgaactgaagctgcaatttcaagcttctggctttttagaatcaattctgcataagccccaaat |
13738763 |
T |
|
| Q |
392 |
tcatttccagttttacccctgtttttctgatgcgttttc |
430 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13738764 |
tcttttccagttttacccctgtttttctgatgcgttttc |
13738802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 430
Target Start/End: Complemental strand, 47218105 - 47218042
Alignment:
| Q |
367 |
aatcaattatgcagaagccccaaattcatttccagttttacccctgtttttctgatgcgttttc |
430 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||||| ||||||| | ||| |||| ||||||||| |
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|
| T |
47218105 |
aatcaattctgcaaaagccccaaatttatttccagctttacccttttttatctgctgcgttttc |
47218042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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