View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_1D_low_42 (Length: 237)
Name: NF4928_1D_low_42
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 16530702 - 16530496
Alignment:
| Q |
22 |
atataatccacaagacattacttttttgacgggttgcttcttgattgattttaatttcactcacgtaattttacctccagaacatgatgcgacaaacaat |
121 |
Q |
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| T |
16530702 |
atataatccacaagacattacttttttgacgggttgcttcttgattgattttaatttcactcacgtaattttacctccagaacatgatgcgacaaacaat |
16530603 |
T |
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| Q |
122 |
ttgtccaactttacaattggaatcaacaaagtcttggtgattcctattgaaatcttatgtaattgcatgtatgttgtacataacaccgtcgtgtacgaca |
221 |
Q |
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| T |
16530602 |
ttgtccaactttacgattagaatcaacaaagtcttggcgattcctattgaaatcttatgtaattgcatgtatgttgtacataacaccatcgtgtacgaca |
16530503 |
T |
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| Q |
222 |
tcttttc |
228 |
Q |
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| T |
16530502 |
ttttttc |
16530496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 16540350 - 16540144
Alignment:
| Q |
22 |
atataatccacaagacattacttttttgacgggttgcttcttgattgattttaatttcactcacgtaattttacctccagaacatgatgcgacaaacaat |
121 |
Q |
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| T |
16540350 |
atataatccacaagacattacttttttgacgggttgcttcttgattgattttaatttcactcacgtaattttacctccagaacatgatgcgacaaacaat |
16540251 |
T |
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| Q |
122 |
ttgtccaactttacaattggaatcaacaaagtcttggtgattcctattgaaatcttatgtaattgcatgtatgttgtacataacaccgtcgtgtacgaca |
221 |
Q |
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| T |
16540250 |
ttgtccaactttacgattagaatcaacaaagtcttggcgattcctattgaaatcttatgtaattgcatgtatgttgtacataacaccatcgtgtacgaca |
16540151 |
T |
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| Q |
222 |
tcttttc |
228 |
Q |
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| T |
16540150 |
ttttttc |
16540144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 833635 - 833482
Alignment:
| Q |
33 |
aagacattacttttttgacgggttgcttcttgattgattttaatttcactcacgtaattttacctccagaacatgatgcgacaaacaatttgtccaactt |
132 |
Q |
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|||||||| ||| |||| |||||| ||||| ||| | ||| ||||||| ||| |||||||||| | || || ||||| |||| | | ||||||||| |
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| T |
833635 |
aagacattccttctttggggggttggttcttaattaactttgatttcacccacataattttaccctcggatcacgatgctacaacctctatgtccaactc |
833536 |
T |
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| Q |
133 |
tacaattggaatcaacaaagtcttggtgattcctattgaaatcttatgtaattg |
186 |
Q |
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| T |
833535 |
tgcgattacaatgaacaaaatcttggcgatccctattgaaatcttatgtaattg |
833482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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