View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_1D_low_43 (Length: 236)
Name: NF4928_1D_low_43
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_low_43 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 51766792 - 51766569
Alignment:
| Q |
11 |
atgaagcaaatgaaaatactaatgatttggttgagttgttgatatggtcatatggcaatatactatcaagtaagaatcctattaaaacactgagctttga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
51766792 |
atgaagcaaatgaaaatactaatgatttggttgagttgttgatatggtcatatggcaatatactatcaagtaagaatcatattaaaacacttagctttga |
51766693 |
T |
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| Q |
111 |
ataaatgaaaagtaattttcattattgagtaagtagaatagtgaggcacatctaagtatatatactgtacatgtattgtaacagaagtggaagatatata |
210 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51766692 |
ataaatggaaagtaattttcattattgagtaagtagaatagtgaggcacacctaagtatatatactgtacatgtattgtaacagaagtggaagatatata |
51766593 |
T |
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| Q |
211 |
tgattaagcgtaactaatgcaataag |
236 |
Q |
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|||||| |||||||||||||||| |
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| T |
51766592 |
--gttaagcctaactaatgcaataag |
51766569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 11335701 - 11335557
Alignment:
| Q |
90 |
tattaaaacactgagctttgaataaatgaaaagtaattttcattattgagtaagtagaatagtgaggcacatctaagtatatatactgtacatgtattgt |
189 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11335701 |
tattaaaacactgaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaaatatatatactgtacatgtattgt |
11335602 |
T |
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| Q |
190 |
aacagaagtggaagatatatatgattaagcgtaactaatgcaataag |
236 |
Q |
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| T |
11335601 |
aacagaagtggaagatatata--gttaagcctaactaatgcaataag |
11335557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 19479531 - 19479387
Alignment:
| Q |
90 |
tattaaaacactgagctttgaataaatgaaaagtaattttcattattgagtaagtagaatagtgaggcacatctaagtatatatactgtacatgtattgt |
189 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
19479531 |
tattaaaacactgaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaagtatatatactttacatgtattgt |
19479432 |
T |
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| Q |
190 |
aacagaagtggaagatatatatgattaagcgtaactaatgcaataag |
236 |
Q |
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||||||||||||| ||||||| |||||| ||||||||| |||||| |
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| T |
19479431 |
aacagaagtggaaaatatata--gttaagcctaactaatggaataag |
19479387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 19484161 - 19484017
Alignment:
| Q |
90 |
tattaaaacactgagctttgaataaatgaaaagtaattttcattattgagtaagtagaatagtgaggcacatctaagtatatatactgtacatgtattgt |
189 |
Q |
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||||||||| |||| || |||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
19484161 |
tattaaaactctgaactctgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaagtttatatactttacatgtattgt |
19484062 |
T |
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| Q |
190 |
aacagaagtggaagatatatatgattaagcgtaactaatgcaataag |
236 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
19484061 |
aacagaagtggaagatatata--gttaagcctaactaatgcaataag |
19484017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 11338064 - 11337919
Alignment:
| Q |
90 |
tattaaaacactgagctttgaataaatgaaaagtaattttcattattgagtaagtagaatagtgagg-cacatctaagtatatatactgtacatgtattg |
188 |
Q |
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|||||||||||||| ||||||||||||| || ||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11338064 |
tattaaaacactgaactttgaataaatggaaggtaattttcattattgagtgattagaatagtgagggcacatctaagtatatatactgtacatgtattg |
11337965 |
T |
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| Q |
189 |
taacagaagtggaagatatatatgattaagcgtaactaatgcaataag |
236 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
11337964 |
caacagaagtggaagatatata--gttaagtctaactaatgcaataag |
11337919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 3278877 - 3279021
Alignment:
| Q |
90 |
tattaaaacactgagctttgaataaatgaaaagtaattttcattattgagtaagtagaatagtgaggcacatctaagtatatatactgtacatgtattgt |
189 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
3278877 |
tattaaaacactgaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaagtgtatatactttacatgtattgt |
3278976 |
T |
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| Q |
190 |
aacagaagtggaagatatatatgattaagcgtaactaatgcaataag |
236 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
3278977 |
aacagaagtggaagatatata--gttaagcctaactaatgcaataag |
3279021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 3277230 - 3277374
Alignment:
| Q |
90 |
tattaaaacactgagctttgaataaatgaaaagtaattttcattattgagtaagtagaatagtgaggcacatctaagtatatatactgtacatgtattgt |
189 |
Q |
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||||||||||| || ||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3277230 |
tattaaaacacggaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaagtatatatactttacatgtattgt |
3277329 |
T |
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| Q |
190 |
aacagaagtggaagatatatatgattaagcgtaactaatgcaataag |
236 |
Q |
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||||||||||||||||||||| |||||| | |||||||||||||| |
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| T |
3277330 |
aacagaagtggaagatatata--gttaagcctgactaatgcaataag |
3277374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 19739001 - 19738857
Alignment:
| Q |
90 |
tattaaaacactgagctttgaataaatgaaaagtaattttcattattgagtaagtagaatagtgaggcacatctaagtatatatactgtacatgtattgt |
189 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
19739001 |
tattaaaacactgaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaagtatatataccgtacatgcattgt |
19738902 |
T |
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| Q |
190 |
aacagaagtggaagatatatatgattaagcgtaactaatgcaataag |
236 |
Q |
| |
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|||||||||||||||| |||| |||||| |||||||||||||||| |
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| T |
19738901 |
aacagaagtggaagatgtata--gttaagcctaactaatgcaataag |
19738857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 19743651 - 19743507
Alignment:
| Q |
90 |
tattaaaacactgagctttgaataaatgaaaagtaattttcattattgagtaagtagaatagtgaggcacatctaagtatatatactgtacatgtattgt |
189 |
Q |
| |
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|||||||||||| | ||||||||||||| ||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19743651 |
tattaaaacactaaactttgaataaatggaaagtaatttttattattgagtgattagaatagtgaggcacatctaagtatatatactgtacatgtattgt |
19743552 |
T |
|
| Q |
190 |
aacagaagtggaagatatatatgattaagcgtaactaatgcaataag |
236 |
Q |
| |
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|||||||||||||||| |||| |||||| |||||||||||||||| |
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| T |
19743551 |
aacagaagtggaagatgtata--gttaagcctaactaatgcaataag |
19743507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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