View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_1D_low_46 (Length: 229)
Name: NF4928_1D_low_46
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_low_46 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 13784292 - 13784070
Alignment:
| Q |
7 |
gagatgtcatgctgctcgctaacaaagaagaacgtttagatcttgttattatgtataatcggagagatgatatagttgaatttcttcaatttcctaacaa |
106 |
Q |
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|||||||| || |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13784292 |
gagatgtcctgttgcttgctaacaaagaagaacttttagatcttgttattatgtataatcggagagatgatatagttgaatttcttcaatttcctaacaa |
13784193 |
T |
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| Q |
107 |
caaaatttgggcggctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaattgtttgtttttagaactttt |
206 |
Q |
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| T |
13784192 |
caaaatttgggcggccgatgaacatatgcatagcttggttttgcctcattctcatccacattaagctcctctacatcaattgtttgtttttagaactttt |
13784093 |
T |
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| Q |
207 |
gctaaactatgaaagtggcgtga |
229 |
Q |
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| T |
13784092 |
gctaaactatgaaagtggcgtga |
13784070 |
T |
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Target: scaffold0128 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 49 - 229
Target Start/End: Complemental strand, 33910 - 33730
Alignment:
| Q |
49 |
ttgttattatgtataatcggagagatgatatagttgaatttcttcaatttcctaacaacaaaatttgggcggctgatgaacatatgcatagcttggtttt |
148 |
Q |
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| T |
33910 |
ttgttattatgtataatcggagagatgatatagttcaatttcttcgacttcctaacaaccaaatttgggcggccgatgaacatatgcgtagcttggtttt |
33811 |
T |
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| Q |
149 |
gcctcgttctcatccacattaagctcctctacatcaattgtttgtttttagaacttttgctaaactatgaaagtggcgtga |
229 |
Q |
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| T |
33810 |
gcctcgtcctcatccacattaagctcctatacttcaattgtttgttttcaaaacttttgctaaactatgaaagtggcgtga |
33730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 41 - 229
Target Start/End: Complemental strand, 40794067 - 40793879
Alignment:
| Q |
41 |
tttagatcttgttattatgtataatcggagagatgatatagttgaatttcttcaatttcctaacaacaaaatttgggcggctgatgaacatatgcatagc |
140 |
Q |
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| T |
40794067 |
tttagattttgttattatgtataatcagatagatgatatagttgaatttcttcaacttcctaacaatcaaatttaggcggccgatgaacatatgcatagc |
40793968 |
T |
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| Q |
141 |
ttggttttgcctcgttctcatccacattaagctcctctacatcaattgtttgtttttagaacttttgctaaactatgaaagtggcgtga |
229 |
Q |
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| T |
40793967 |
ttgattttgcctcgtcatcatccacattaagctcctctatgtcaattgtttgttttcagaacttttgctagactatgaaagtggtgtga |
40793879 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 193
Target Start/End: Complemental strand, 33637534 - 33637397
Alignment:
| Q |
56 |
tatgtataatcggagagatgatatagttgaatttcttcaatttcctaacaacaaaatttgggcggctgatgaacatatgcatagcttggttttgcctcgt |
155 |
Q |
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| T |
33637534 |
tatgtataataggagagatgatagagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggtttttccccgt |
33637435 |
T |
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| Q |
156 |
tctcatccacattaagctcctctacatcaattgtttgt |
193 |
Q |
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| T |
33637434 |
cctcttccacattaagcttctatgcaacaattgtttgt |
33637397 |
T |
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Target: scaffold0267 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 13632 - 13709
Alignment:
| Q |
120 |
gctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaattgtttgttttt |
197 |
Q |
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| T |
13632 |
gctgatgaacatatgcagagcttggttttgccttgtcctcgtccacattaatctcgtatgcaacaaatgtttgttttt |
13709 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 3838151 - 3838228
Alignment:
| Q |
120 |
gctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaattgtttgttttt |
197 |
Q |
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| T |
3838151 |
gctgaggaacatatgcagagcttggttttgccttgtcctcatccacattaatctcgtatgcaacaactgtttgttttt |
3838228 |
T |
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