View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928_1D_low_47 (Length: 228)

Name: NF4928_1D_low_47
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928_1D_low_47
NF4928_1D_low_47
[»] chr7 (6 HSPs)
chr7 (1-222)||(44541705-44541927)
chr7 (179-219)||(29060739-29060779)
chr7 (179-219)||(42607089-42607129)
chr7 (179-222)||(24996680-24996723)
chr7 (179-219)||(32871140-32871180)
chr7 (179-219)||(42607812-42607852)
[»] chr3 (3 HSPs)
chr3 (179-219)||(33455781-33455821)
chr3 (179-219)||(49161808-49161848)
chr3 (179-219)||(51421675-51421715)
[»] chr8 (1 HSPs)
chr8 (179-219)||(37562303-37562343)
[»] chr1 (5 HSPs)
chr1 (179-220)||(4640536-4640577)
chr1 (179-220)||(4641761-4641802)
chr1 (179-219)||(38931322-38931362)
chr1 (179-219)||(41884229-41884269)
chr1 (179-219)||(48835097-48835137)
[»] chr5 (1 HSPs)
chr5 (179-219)||(4789528-4789568)
[»] chr4 (1 HSPs)
chr4 (179-219)||(25970114-25970154)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 44541927 - 44541705
Alignment:
Q  1 caaaaagaagcaattttgaacgaaacagtgaatttcactatgctgcaaaaggaacaaccatcaatattgacatcatgggttatgcccatgctgatgttag 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44541927 caaaaagaagcaattttgaacgaaacagcgaatttcactatgctgcaaaaggaacaaccatcaatattgacatcctgggttatgcccatgctgatgttag 44541828  T
Q  101 gattgctaatgctcctagttctgctgacccgtggcttacaggaatctcttaatgtttttgatgatgcgattgatggca-ttagcatgggaaaggggaatt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||    
T  44541827 gattgctaatgctcctagttctgctgacccgtggcttacaggaatctcttaatgttcttgatgatgcgattgatggcatttagcatgggaaagtggaatt 44541728  T
Q  200 gtttccgaccataggaaagtatt 222  Q
    |||||||||||| ||||||||||    
T  44541727 gtttccgaccatgggaaagtatt 44541705  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 29060779 - 29060739
Alignment:
Q  179 ttagcatgggaaaggggaattgtttccgaccataggaaagt 219  Q
    ||||||||||||||||||||||||||| ||||| |||||||    
T  29060779 ttagcatgggaaaggggaattgtttcccaccatgggaaagt 29060739  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 42607089 - 42607129
Alignment:
Q  179 ttagcatgggaaaggggaattgtttccgaccataggaaagt 219  Q
    ||||||||||||||||||||||||||| ||||| |||||||    
T  42607089 ttagcatgggaaaggggaattgtttcccaccatgggaaagt 42607129  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 24996723 - 24996680
Alignment:
Q  179 ttagcatgggaaaggggaattgtttccgaccataggaaagtatt 222  Q
    |||||||||||||||||| |||||||| ||||| ||||||||||    
T  24996723 ttagcatgggaaaggggagttgtttcccaccatgggaaagtatt 24996680  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 32871180 - 32871140
Alignment:
Q  179 ttagcatgggaaaggggaattgtttccgaccataggaaagt 219  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  32871180 ttagcatgggaatggggagttgtttcccaccataggaaagt 32871140  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 42607852 - 42607812
Alignment:
Q  179 ttagcatgggaaaggggaattgtttccgaccataggaaagt 219  Q
    ||||||||| ||||||||||||||||| | |||||||||||    
T  42607852 ttagcatggaaaaggggaattgtttcccatcataggaaagt 42607812  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 33455821 - 33455781
Alignment:
Q  179 ttagcatgggaaaggggaattgtttccgaccataggaaagt 219  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  33455821 ttagcatgggaaaggggaattgtttcccaccataggaaagt 33455781  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 49161848 - 49161808
Alignment:
Q  179 ttagcatgggaaaggggaattgtttccgaccataggaaagt 219  Q
    ||||||||||||||||||||||||||| ||||| |||||||    
T  49161848 ttagcatgggaaaggggaattgtttcccaccatgggaaagt 49161808  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 51421715 - 51421675
Alignment:
Q  179 ttagcatgggaaaggggaattgtttccgaccataggaaagt 219  Q
    |||||||| |||||||||||||||||| ||||| |||||||    
T  51421715 ttagcatgagaaaggggaattgtttcccaccatgggaaagt 51421675  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 37562303 - 37562343
Alignment:
Q  179 ttagcatgggaaaggggaattgtttccgaccataggaaagt 219  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  37562303 ttagcatgggaaaggagaattgtttcccaccataggaaagt 37562343  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 4640536 - 4640577
Alignment:
Q  179 ttagcatgggaaaggggaattgtttccgaccataggaaagta 220  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||    
T  4640536 ttagcatggtaaaggggaattgtttcccaccatgggaaagta 4640577  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 4641802 - 4641761
Alignment:
Q  179 ttagcatgggaaaggggaattgtttccgaccataggaaagta 220  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  4641802 ttagcatgggaaaggggaattgtttcccaccaagggaaagta 4641761  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 38931322 - 38931362
Alignment:
Q  179 ttagcatgggaaaggggaattgtttccgaccataggaaagt 219  Q
    |||||||| |||||||||||||||||| ||||| |||||||    
T  38931322 ttagcatgagaaaggggaattgtttcccaccatgggaaagt 38931362  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 41884269 - 41884229
Alignment:
Q  179 ttagcatgggaaaggggaattgtttccgaccataggaaagt 219  Q
    ||||||||| |||||| |||||||||| |||||||||||||    
T  41884269 ttagcatggaaaagggaaattgtttcccaccataggaaagt 41884229  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 48835137 - 48835097
Alignment:
Q  179 ttagcatgggaaaggggaattgtttccgaccataggaaagt 219  Q
    ||||||||||||||||||||||||| | ||||| |||||||    
T  48835137 ttagcatgggaaaggggaattgttttccaccatgggaaagt 48835097  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 4789528 - 4789568
Alignment:
Q  179 ttagcatgggaaaggggaattgtttccgaccataggaaagt 219  Q
    |||||||||||||||||| |||||||| ||||| |||||||    
T  4789528 ttagcatgggaaaggggagttgtttcccaccatgggaaagt 4789568  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 25970114 - 25970154
Alignment:
Q  179 ttagcatgggaaaggggaattgtttccgaccataggaaagt 219  Q
    |||||||||||||||||| |||||||| ||||| |||||||    
T  25970114 ttagcatgggaaaggggagttgtttcccaccatgggaaagt 25970154  T

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