View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_1D_low_48 (Length: 228)
Name: NF4928_1D_low_48
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_low_48 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 10429170 - 10429375
Alignment:
| Q |
23 |
gaataatgtgtggtacttctgatccatcacaaaattcctccaaacaaattgaacattgttccattgaacaaaaagaagtatcaacatctttcactttaag |
122 |
Q |
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| T |
10429170 |
gaataatgtgtggtacttctgatccatcacaaaattcctccaaacaaattgaacattgttctcttgaacaaaaagaagtatcaacatctttcactttaag |
10429269 |
T |
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| Q |
123 |
cttctccaacatcttggaaagggacgcaatagcattcacatcatcactaatatttgatgttgtgtcaacaaacacatccatctccaatattctatatcct |
222 |
Q |
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| T |
10429270 |
cttctccaacatcttggaaagggacgcaatagcattctcatcatcactaatatttgatgttgtgtcaacaaacacatccatctccaatattctatatcct |
10429369 |
T |
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| Q |
223 |
tcaaag |
228 |
Q |
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|||||| |
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| T |
10429370 |
tcaaag |
10429375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 10396902 - 10396954
Alignment:
| Q |
38 |
cttctgatccatcacaaaattcctccaaacaaattgaacattgttccattgaa |
90 |
Q |
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| T |
10396902 |
cttctgatccacaacaaaattcctccaaacaaattgcacattctttcattgaa |
10396954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 10407122 - 10407174
Alignment:
| Q |
38 |
cttctgatccatcacaaaattcctccaaacaaattgaacattgttccattgaa |
90 |
Q |
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| T |
10407122 |
cttctgatccacaacaaaattcctccaaacaaattgcacattctttcattgaa |
10407174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 10381482 - 10381542
Alignment:
| Q |
33 |
tggtacttctgatccatcacaaaattcctccaaacaaattgaacattgttccattgaacaa |
93 |
Q |
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| T |
10381482 |
tggtacttctgtttcattgtaaaactccttcaaacaaattgagcattgttccattgaacaa |
10381542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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