View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4928_1D_low_5 (Length: 430)
Name: NF4928_1D_low_5
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 38528275 - 38528489
Alignment:
| Q |
1 |
tcaaactaactaagattcgttcacaagcatcttatgaacatgtattttggtttcttaacttggatttatccnnnnnnncagctacaaatgtgaacacatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38528275 |
tcaaactaactaagattcgttcacaagcatcttatgaacatgtattttggtttcttaacttggatttatccaaaaaaacagctacaaatgtgaacacatt |
38528374 |
T |
|
| Q |
101 |
caaaactatagcaaataaatatgaacacgtaaatacacgcttgaatcagctgatccaaaacaagaaagttaggattagaaacatgtttttatttttgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38528375 |
caaaactatagcaaataaatatgaacacgtaaatacacgcttgaatcagctgatccaaaacaagaaagttaggattagaaacatgtttttatttttgttt |
38528474 |
T |
|
| Q |
201 |
cttatcacaccacat |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38528475 |
cttatcacaccacat |
38528489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 319 - 408
Target Start/End: Original strand, 38528590 - 38528679
Alignment:
| Q |
319 |
accaactttatagaacttgaatccataagagattnnnnnnntatatacatattgaaatggtcatgattcatgaataagaacatacctgtt |
408 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38528590 |
accaactttatagaacttgaatccatgagagattaaagaaatatatacatattgaaatggtcatgattaatgaataagaacatacctgtt |
38528679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University