View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_1D_low_55 (Length: 218)
Name: NF4928_1D_low_55
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 12627220 - 12627045
Alignment:
| Q |
22 |
tgatgcttttgtttgtataagactatgaagcatggacactcctctggttaagggtgtccttgggtgtcagacacgcgtcggtgtctccgatacaccgaca |
121 |
Q |
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| T |
12627220 |
tgatgcttttgtttgtataagactatgaagcatggacactcctctggttaggggtgtccttgggtgtcagacatgcgtcggtgtctccgatacaccgaca |
12627121 |
T |
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| Q |
122 |
ccaacacgacacctataactagaccgaatattatgccattttctcacattattatctgtgtccgtgtccgtgtcat |
197 |
Q |
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| T |
12627120 |
ccaaaacgacacctataactacaccgaatattatgccattttctcacattattatctgtgtcggtgtccgtgtcat |
12627045 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 10230067 - 10230146
Alignment:
| Q |
116 |
ccgacaccaacacgacacctataactagaccgaatattatgccattttctcacattattatctgtgtccgtgtccgtgtcat |
197 |
Q |
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| T |
10230067 |
ccgacaccaacacgacatctatacttacactgaat--tatgtcatttcctcaaattattatctgagtcagtgtccgtgtcat |
10230146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 40747767 - 40747844
Alignment:
| Q |
116 |
ccgacaccaacacgacacctataactagaccgaatattatgccattttctcacattattatctgtgtccgtgtccgtgtc |
195 |
Q |
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| T |
40747767 |
ccgacaccaacatgacacctataattacattga--attatgtcattttctcaaattattatccgtgtcggtgtctgtgtc |
40747844 |
T |
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