View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4928_1D_low_6 (Length: 414)
Name: NF4928_1D_low_6
Description: NF4928_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_1D_low_6 |
 | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
| [»] scaffold0059 (2 HSPs) |
| | |
|
| [»] scaffold1750 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0554 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 5 - 393
Target Start/End: Complemental strand, 6762 - 6374
Alignment:
| Q |
5 |
aaattattcttccagcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttc |
104 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6762 |
aaattcttcttccagcaccaaaaggaatgtactcaaaattaccccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttc |
6663 |
T |
|
| Q |
105 |
agcccagtagtttggatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctttaccacat |
204 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6662 |
agtccagaagtttggatctcttgcaattgcccaagcattgattatcaccttactcctaaacggtatgttataaccatttatctcacatgctttaccacat |
6563 |
T |
|
| Q |
205 |
tctcttggtagcaaaagaggtcctgaagggtgtaacctaagggtttctttgacaactgatttcaaataattgagtttgctaatgtaattttcatcaaccc |
304 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6562 |
tctcttggtagcaaaagaggtgctggagggtgtaacctaagggtttctttgacgactgatttcaaataattgagtttgctaatgtaattttcatcaacct |
6463 |
T |
|
| Q |
305 |
ttccattcaatttaaaaacctctctcacctcagcttgtgctttcttcattattcttggctcccttatcatttctgccattgcccaatct |
393 |
Q |
| |
|
||||||||||| ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6462 |
ttccattcaatgtaaaaacttctcgcacctcagcttgtgctttcatcattattcttggctcccttatcatttctgccattgcccaatct |
6374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 389
Target Start/End: Original strand, 23039039 - 23039417
Alignment:
| Q |
11 |
ttcttccagcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagccca |
110 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||| |||||||||||||| | ||||||| |||||||||||||||||| ||||| || |||| ||| |
|
|
| T |
23039039 |
ttcttccggcaccaaaaggaatgtactcataattacttcctttatagtcaatggcgctgtcaaggaatctctctggataaaatctctccggctcagtcca |
23039138 |
T |
|
| Q |
111 |
gtagtttggatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctttaccacattctctt |
210 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| || || |||||||||| |
|
|
| T |
23039139 |
gtaatttggatctcttgcaattgcccaagcattgactatcaccttactcttaataggtatgtgataaccatttatctcacatgtttgacgacattctctt |
23039238 |
T |
|
| Q |
211 |
ggtagcaaaagaggtcctgaagggtgtaacctaagggtttctttgacaactgatttcaaataattgagtttgctaatgtaattttcatcaacccttccat |
310 |
Q |
| |
|
|| |||||||||||| || |||||||||||| |||||||||||||||||||| |||||||||||||||| | ||| ||||||||||||||||||| | |
|
|
| T |
23039239 |
ggcagcaaaagaggtgttggagggtgtaacctcagggtttctttgacaactgacttcaaataattgagttcattgatgcaattttcatcaacccttcctt |
23039338 |
T |
|
| Q |
311 |
tcaatttaaaaacctctctcacctcagcttgtgctttcttcattattcttggctcccttatcatttctgccattgccca |
389 |
Q |
| |
|
||| ||| |||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
23039339 |
tcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatcccttatcatttctaccattgccca |
23039417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 11 - 393
Target Start/End: Original strand, 23145918 - 23146300
Alignment:
| Q |
11 |
ttcttccagcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagccca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23145918 |
ttcttccagcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctgtcgatgaatctctctggataaaacctctctggttcagtcca |
23146017 |
T |
|
| Q |
111 |
gtagtttggatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctttaccacattctctt |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |||||||| |||||||||||| |||||| ||| || ||||||||| |
|
|
| T |
23146018 |
gtagtttggatctcttgcaactgcccaagcattgactaacaccttagtcttaatcggtatgtgataaccatttatatcacattcttgactacattctctc |
23146117 |
T |
|
| Q |
211 |
ggtagcaaaagaggtcctgaagggtgtaacctaagggtttctttgacaactgatttcaaataattgagtttgctaatgtaattttcatcaacccttccat |
310 |
Q |
| |
|
|||| |||||||||| ||| |||||||| ||| | |||||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||||| | |
|
|
| T |
23146118 |
ggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacccttcctt |
23146217 |
T |
|
| Q |
311 |
tcaatttaaaaacctctctcacctcagcttgtgctttcttcattattcttggctcccttatcatttctgccattgcccaatct |
393 |
Q |
| |
|
||| ||| |||||||||||||||||| |||||||||||||||| |||||||| ||| ||| || |||| |||||||||||||| |
|
|
| T |
23146218 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcatgattcttggatcctttaccaattctaccattgcccaatct |
23146300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 393
Target Start/End: Original strand, 23036168 - 23036550
Alignment:
| Q |
11 |
ttcttccagcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagccca |
110 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| |||||| |||||||||| |||||| |||||||||| |||||||| ||||||||||||| ||| |
|
|
| T |
23036168 |
ttcttccggcaccaaaaggaatgtactcaaagttactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtcca |
23036267 |
T |
|
| Q |
111 |
gtagtttggatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctttaccacattctctt |
210 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| | | | ||||||||||||| ||||||| ||||||||||||| ||||||||| | |||| |||||| |
|
|
| T |
23036268 |
gtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctctt |
23036367 |
T |
|
| Q |
211 |
ggtagcaaaagaggtcctgaagggtgtaacctaagggtttctttgacaactgatttcaaataattgagtttgctaatgtaattttcatcaacccttccat |
310 |
Q |
| |
|
||||||||||||||| || |||||||||||| |||||||||||||| ||||||||||||||| |||||| | | || |||| || || |||||||| | |
|
|
| T |
23036368 |
ggtagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagttcgttgatacaattctcttcgacccttcctt |
23036467 |
T |
|
| Q |
311 |
tcaatttaaaaacctctctcacctcagcttgtgctttcttcattattcttggctcccttatcatttctgccattgcccaatct |
393 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
23036468 |
tcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgccattgcccaatct |
23036550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 393
Target Start/End: Original strand, 23017060 - 23017442
Alignment:
| Q |
11 |
ttcttccagcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagccca |
110 |
Q |
| |
|
|||||||| |||||||||||||||| || || ||| |||||||||||||||| | ||||| |||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
23017060 |
ttcttccaccaccaaaaggaatgtattcgaagttactccctttatagtcaataccgttgtcaatgaatctctctggataaaacttctctggttcagtcca |
23017159 |
T |
|
| Q |
111 |
gtagtttggatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctttaccacattctctt |
210 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | |||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23017160 |
gtagtttggatctcttgcgattgcccaagcattaattatcaccttagtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctctt |
23017259 |
T |
|
| Q |
211 |
ggtagcaaaagaggtcctgaagggtgtaacctaagggtttctttgacaactgatttcaaataattgagtttgctaatgtaattttcatcaacccttccat |
310 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| |||| |||||| | ||| | ||||||||||||| ||| | |
|
|
| T |
23017260 |
ggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcatttatgcatttttcatcaacccgtcctt |
23017359 |
T |
|
| Q |
311 |
tcaatttaaaaacctctctcacctcagcttgtgctttcttcattattcttggctcccttatcatttctgccattgcccaatct |
393 |
Q |
| |
|
||| ||| | ||| || ||||| ||| ||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
23017360 |
tcatttttataacatccctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatct |
23017442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 393
Target Start/End: Original strand, 23148756 - 23149138
Alignment:
| Q |
11 |
ttcttccagcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagccca |
110 |
Q |
| |
|
||||||| |||||||||||||||||||| || ||| |||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23148756 |
ttcttccggcaccaaaaggaatgtactcgaagttactccctttatagtcaatatcgctttcaatgaatctctctggataaaacctctctggttcagtcca |
23148855 |
T |
|
| Q |
111 |
gtagtttggatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctttaccacattctctt |
210 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||| ||| |||||| ||| |||| |||||||||||| ||||| |||| || ||||||||| |
|
|
| T |
23148856 |
gtagtttgaatctcttgcaattgcccaagcattgattatcactttagtcttaatcggaatgtgataaccatttatatcacacgcttgactacattctctc |
23148955 |
T |
|
| Q |
211 |
ggtagcaaaagaggtcctgaagggtgtaacctaagggtttctttgacaactgatttcaaataattgagtttgctaatgtaattttcatcaacccttccat |
310 |
Q |
| |
|
|||| |||||||||| | | |||||||| ||| | |||||||||||||||| |||||||||||||||||| | ||| |||||||||||||| |||| | |
|
|
| T |
23148956 |
ggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacctttcctt |
23149055 |
T |
|
| Q |
311 |
tcaatttaaaaacctctctcacctcagcttgtgctttcttcattattcttggctcccttatcatttctgccattgcccaatct |
393 |
Q |
| |
|
||| ||| |||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||| ||| |||||||||||||| |
|
|
| T |
23149056 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatct |
23149138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 393
Target Start/End: Original strand, 23032712 - 23033079
Alignment:
| Q |
11 |
ttcttccagcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagccca |
110 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||||| ||| |
|
|
| T |
23032712 |
ttcttccggcaccaaagggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctct---------------ctggttcagtcca |
23032796 |
T |
|
| Q |
111 |
gtagtttggatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctttaccacattctctt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
23032797 |
gtagtttggatctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctctt |
23032896 |
T |
|
| Q |
211 |
ggtagcaaaagaggtcctgaagggtgtaacctaagggtttctttgacaactgatttcaaataattgagtttgctaatgtaattttcatcaacccttccat |
310 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||||||| |||| | |
|
|
| T |
23032897 |
ggtagcaaaagaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgagatcggggatgtaattttcatcaacctttcctt |
23032996 |
T |
|
| Q |
311 |
tcaatttaaaaacctctctcacctcagcttgtgctttcttcattattcttggctcccttatcatttctgccattgcccaatct |
393 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||| | | || ||||||||||||| ||| ||||||||| |
|
|
| T |
23032997 |
tcattttgaaaacctctctcacctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgcccaatct |
23033079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 23140052 - 23140426
Alignment:
| Q |
19 |
gcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagcccagtagtttg |
118 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||| | | ||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
23140052 |
gcaccaaaaggaatgtactcaaaatcactccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttg |
23140151 |
T |
|
| Q |
119 |
gatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctttaccacattctcttggtagcaa |
218 |
Q |
| |
|
||||||| || |||||||| |||||||| | ||||||| ||||||| ||||||| |||||||| |||||||||||||| |||||| |||||||||||||| |
|
|
| T |
23140152 |
gatctctcgcgattgcccatgcattgacgaccaccttagtcttaaatggtatgtgataaccatgtatctcacatgcttgaccacactctcttggtagcaa |
23140251 |
T |
|
| Q |
219 |
aagaggtcctgaagggtgtaacctaagggtttctttgacaactgatttcaaataattgagtttgctaatgtaattttcatcaacccttccattcaattta |
318 |
Q |
| |
|
|||||| | | || ||||||||| | |||||||||||| | |||||||||||||| ||| | | | ||| ||||||||||||||||||| |||| ||| |
|
|
| T |
23140252 |
aagaggcaccggagtgtgtaacctcaaggtttctttgacgattgatttcaaataatggagctcgttgatgcaattttcatcaacccttcctttcattttg |
23140351 |
T |
|
| Q |
319 |
aaaacctctctcacctcagcttgtgctttcttcattattcttggctcccttatcatttctgccattgcccaatct |
393 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
23140352 |
aaaacctctctcacctcatcttgcactttcttcattattcttggatcccttatcatttctaccattgcccaatct |
23140426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 23024278 - 23024652
Alignment:
| Q |
19 |
gcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagcccagtagtttg |
118 |
Q |
| |
|
|||||||||||||| |||||||| ||| |||||||||||||||| || || ||||||||||||||||||||||||||||||| | |||||| |||| |
|
|
| T |
23024278 |
gcaccaaaaggaatatactcaaagttactccctttatagtcaatatcactatcgatgaatctctctggataaaacctctctggttcggtccagtaatttg |
23024377 |
T |
|
| Q |
119 |
gatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctttaccacattctcttggtagcaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| || |||| |||||| | ||||| ||||| || | |||||||||| |||| || |
|
|
| T |
23024378 |
gatctcttgcaattgcccaagcattgactatcaccttagtcttagttggaatgtcataaccgtctatcttacatgattgagcacattctctcggtattaa |
23024477 |
T |
|
| Q |
219 |
aagaggtcctgaagggtgtaacctaagggtttctttgacaactgatttcaaataattgagtttgctaatgtaattttcatcaacccttccattcaattta |
318 |
Q |
| |
|
||| ||| | | |||||||||||| |||||||||||||||| ||||||||||||||| |||| | || |||| || ||||||||||| |||| || |
|
|
| T |
23024478 |
aagtggtgccggagggtgtaacctcagggtttctttgacaattgatttcaaataattaagttcattgatacaattctcttcaacccttcctttcatattg |
23024577 |
T |
|
| Q |
319 |
aaaacctctctcacctcagcttgtgctttcttcattattcttggctcccttatcatttctgccattgcccaatct |
393 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||| | | ||| |||||||||||||||||||||| |
|
|
| T |
23024578 |
aaaatctctcgcacctcagcttgtgctttcttcattattcttggattctttaccatttctgccattgcccaatct |
23024652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 22831833 - 22832042
Alignment:
| Q |
11 |
ttcttccagcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagccca |
110 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| || |||||||| | | || ||| ||||||| || |||||||| || ||||| || |||| |
|
|
| T |
22831833 |
ttctaccagcaccaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtccca |
22831932 |
T |
|
| Q |
111 |
gtagtttggatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctttaccacattctctt |
210 |
Q |
| |
|
| |||||||||||| |||| ||||||||||| |||||||| || || ||||| ||||| | ||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
22831933 |
atgatttggatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctctt |
22832032 |
T |
|
| Q |
211 |
ggtagcaaaa |
220 |
Q |
| |
|
|| ||||||| |
|
|
| T |
22832033 |
ggaagcaaaa |
22832042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 22941576 - 22941367
Alignment:
| Q |
11 |
ttcttccagcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagccca |
110 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||| || ||||| || | | || ||| | || || || |||||||| |||||||| ||| |||| |
|
|
| T |
22941576 |
ttcttccagcaccaaatggaatgaactcaaaattatttcccttataatctacacaactttcaataaacctttcaggataaaatctctctgggtcatccca |
22941477 |
T |
|
| Q |
111 |
gtagtttggatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctttaccacattctctt |
210 |
Q |
| |
|
| |||||||||||| |||| ||||||||||| |||||||| || || ||||| ||||| | ||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
22941476 |
atgatttggatctcttccaatggcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatttcacatgcttgtccacattctctt |
22941377 |
T |
|
| Q |
211 |
ggtagcaaaa |
220 |
Q |
| |
|
|| ||||||| |
|
|
| T |
22941376 |
ggaagcaaaa |
22941367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 22971943 - 22972134
Alignment:
| Q |
5 |
aaattattcttccagcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttc |
104 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||| ||||| | |||| || || ||| | ||||| || ||||||||| | ||||| || |
|
|
| T |
22971943 |
aaattcttcttccagcaccaaatggaatgtactcaaaatttgttcctttgaaatcaagagaactatcaataaatctttcaggataaaacttatctggatc |
22972042 |
T |
|
| Q |
105 |
agcccagtagtttggatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctt |
196 |
Q |
| |
|
|| ||| || |||||||| ||| |||||||||||||||||| ||||||| |||| || | ||||||| |||||||| |||||||| |||| |
|
|
| T |
22972043 |
agtccaatattttggatcccttccaattgcccaagcattgattatcaccctacttttgattggtatgtgataaccatcaatctcacaagctt |
22972134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 22946404 - 22946587
Alignment:
| Q |
13 |
cttccagcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagcccagt |
112 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| ||||| | |||| || || ||| | ||||| || ||||||||| | ||||| |||| ||| | |
|
|
| T |
22946404 |
cttccggcaccaaatggaatgtactcaaaatttgttcctttgaaatcaacagaactatcaataaatctttcaggataaaacttatctggatcagtccaat |
22946503 |
T |
|
| Q |
113 |
agtttggatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctt |
196 |
Q |
| |
|
| |||||||| ||| |||||||||||||||||| ||||||| |||| || | ||||||| |||||||| ||||||||||||| |
|
|
| T |
22946504 |
attttggatcccttccaattgcccaagcattgattatcaccctactattgattggtatgtgataaccatcaatctcacatgctt |
22946587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 22916799 - 22916688
Alignment:
| Q |
85 |
ggataaaacctctctggttcagcccagtagtttggatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccattta |
184 |
Q |
| |
|
|||||||| || ||||| ||| |||| | |||||||||||| |||| ||||||||||| |||||||| || || ||||| ||||| ||| ||||||| |
|
|
| T |
22916799 |
ggataaaatctttctggatcatcccaattatttggatctcttccaatggcccaagcattcactatcactttgcttttaaatggtataccatacccattta |
22916700 |
T |
|
| Q |
185 |
tctcacatgctt |
196 |
Q |
| |
|
| |||||||||| |
|
|
| T |
22916699 |
tttcacatgctt |
22916688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 22986277 - 22986309
Alignment:
| Q |
13 |
cttccagcaccaaaaggaatgtactcaaaatta |
45 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
22986277 |
cttccagcaccaaatggaatgtactcaaaatta |
22986309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 393
Target Start/End: Original strand, 21779811 - 21780193
Alignment:
| Q |
11 |
ttcttccagcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagccca |
110 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| ||||||| |||||||| ||| || |||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
21779811 |
ttcttccggcaccaaatggaatgtactcaaaattactccctttaaagtcaatatcgctatcgatgaatctctctggataaaacatctctggttcagtcca |
21779910 |
T |
|
| Q |
111 |
gtagtttggatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctttaccacattctctt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| |||| ||||||||||| |||||||||| || ||||||||| |
|
|
| T |
21779911 |
gtagtttggatctcttgcaattgcccaagcattgattatcaccttagtcttaatcggaatgtggtaaccatttatatcacatgcttgactacattctctc |
21780010 |
T |
|
| Q |
211 |
ggtagcaaaagaggtcctgaagggtgtaacctaagggtttctttgacaactgatttcaaataattgagtttgctaatgtaattttcatcaacccttccat |
310 |
Q |
| |
|
|||| |||||||||| ||| |||||||| ||| | ||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| | |
|
|
| T |
21780011 |
ggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattgagttcattgatgcaattttcatcaacccttcctt |
21780110 |
T |
|
| Q |
311 |
tcaatttaaaaacctctctcacctcagcttgtgctttcttcattattcttggctcccttatcatttctgccattgcccaatct |
393 |
Q |
| |
|
||| ||| ||||| |||||||| ||| ||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| |
|
|
| T |
21780111 |
tcattttgaaaacttctctcacttcatcttgtgctttcttcattattcttggatcccttaccatttctaccattgcccaatct |
21780193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 15885964 - 15885697
Alignment:
| Q |
11 |
ttcttccagcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagccca |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15885964 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctggttcagtcca |
15885865 |
T |
|
| Q |
111 |
gtagtttggatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctttaccacattctctt |
210 |
Q |
| |
|
|| |||||||||||| |||| ||||| ||||||||||||||||| || || ||||| | |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
15885864 |
atactttggatctcttccaatcgcccatgcattgactatcaccttgcttttggttggtatatgataaccatcaatctcacatgcttgttcacattctctt |
15885765 |
T |
|
| Q |
211 |
ggtagcaaaagaggtcctgaagggtgtaacctaagggtttctttgacaactgatttcaaataattgag |
278 |
Q |
| |
|
|| || |||||||| ||| |||||||||||| | ||| ||||| |||||||| ||||||||| |||| |
|
|
| T |
15885764 |
ggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgag |
15885697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 11 - 390
Target Start/End: Original strand, 12609903 - 12610282
Alignment:
| Q |
11 |
ttcttccagcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagccca |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||| |||||||||| ||| | |||||||||| ||||||||| |||||||||||| ||| |
|
|
| T |
12609903 |
ttcttccagcaccaaagggaatgtactcaaaattattccctttgtagtcaatagagctaccgatgaatctctccggataaaacttctctggttcagtcca |
12610002 |
T |
|
| Q |
111 |
gtagtttggatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctttaccacattctctt |
210 |
Q |
| |
|
||| |||||||||||| |||| ||||| ||||||||||||||||| || || | ||||| ||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
12610003 |
gtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatacgatacccatcaatctcacatgcttgtccacattctctt |
12610102 |
T |
|
| Q |
211 |
ggtagcaaaagaggtcctgaagggtgtaacctaagggtttctttgacaactgatttcaaataattgagtttgctaatgtaattttcatcaacccttccat |
310 |
Q |
| |
|
|| || |||||||| |||| ||| |||||||| | ||| ||||| |||||||| || |||||| |||||| | || ||||||| ||||| |||| | |
|
|
| T |
12610103 |
ggaagtaaaagaggacctggaggatgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctt |
12610202 |
T |
|
| Q |
311 |
tcaatttaaaaacctctctcacctcagcttgtgctttcttcattattcttggctcccttatcatttctgccattgcccaa |
390 |
Q |
| |
|
||| || || | ||||| |||||| |||||||||||||||| | |||| ||||||| || |||| |||||||||| |
|
|
| T |
12610203 |
tcatgttgaatatatctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacattgcccaa |
12610282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 12636999 - 12637146
Alignment:
| Q |
11 |
ttcttccagcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagccca |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||| |||||||||| ||| || ||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
12636999 |
ttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtcca |
12637098 |
T |
|
| Q |
111 |
gtagtttggatctcttgcaattgcccaagcattgactatcaccttact |
158 |
Q |
| |
|
||| ||||||||||| |||||| ||| ||||| |||||||||||||| |
|
|
| T |
12637099 |
gtactttggatctctaccaattgtccatgcatttactatcaccttact |
12637146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 62154 - 62408
Alignment:
| Q |
14 |
ttccagcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagcccagta |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||| || |||||||||| || || ||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
62154 |
ttccagcaccaaaaggaatgtactcgaaattattcccgttgtagtcaatagaactaccaatgaatctctctggataaaacctctctggttccgtccagta |
62253 |
T |
|
| Q |
114 |
gtttggatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctttaccacattctcttggt |
213 |
Q |
| |
|
||||||||||| | |||||||| ||||| ||||||| ||| | || | ||||| | ||| |||| ||||||||||||| | |||||||||||| |
|
|
| T |
62254 |
ccttggatctcttccgattgcccatgcattaactatcagctttgttttcattggtatatgatacccatcaatctcacatgcttctctacattctcttgga |
62353 |
T |
|
| Q |
214 |
agcaaaagaggtcctgaagggtgtaacctaagggtttctttgacaactgatttca |
268 |
Q |
| |
|
|| ||||||| |||| ||||||||||| ||||| ||||| |||| ||| |||| |
|
|
| T |
62354 |
agtaaaagagcacctggggggtgtaacctcagggtctctttcacaattgacttca |
62408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 390
Target Start/End: Original strand, 62465 - 62530
Alignment:
| Q |
325 |
tctctcacctcagcttgtgctttcttcattattcttggctcccttatcatttctgccattgcccaa |
390 |
Q |
| |
|
|||||||| ||| |||||||||||||||| | |||||| || |||| || ||||||||||||||| |
|
|
| T |
62465 |
tctctcacttcatcttgtgctttcttcatcactcttggatctcttaccaactctgccattgcccaa |
62530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 5594232 - 5594023
Alignment:
| Q |
11 |
ttcttccagcaccaaaaggaatgtactcaaaattatcccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagccca |
110 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| || |||||||| | | || ||| ||||||| || |||||||| || ||||| || |||| |
|
|
| T |
5594232 |
ttctaccagcaccaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtccca |
5594133 |
T |
|
| Q |
111 |
gtagtttggatctcttgcaattgcccaagcattgactatcaccttactcttaaacggtatgttataaccatttatctcacatgctttaccacattctctt |
210 |
Q |
| |
|
| |||||||||||| |||| ||||||||||| |||||||| || || ||||| ||||| | ||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
5594132 |
atgatttggatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctctt |
5594033 |
T |
|
| Q |
211 |
ggtagcaaaa |
220 |
Q |
| |
|
|| ||||||| |
|
|
| T |
5594032 |
ggaagcaaaa |
5594023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 23610538 - 23610595
Alignment:
| Q |
334 |
tcagcttgtgctttcttcattattcttggctcccttatcatttctgccattgcccaat |
391 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| ||||||| || ||||||||||||| |
|
|
| T |
23610538 |
tcagcttgtgctttcttcaaaattcttggatcctttatcatctcagccattgcccaat |
23610595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1750 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1750
Description:
Target: scaffold1750; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 1209 - 1173
Alignment:
| Q |
118 |
ggatctcttgcaattgcccaagcattgactatcacct |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1209 |
ggatctcttgcaattgcccaagcattgactattacct |
1173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 35650223 - 35650187
Alignment:
| Q |
118 |
ggatctcttgcaattgcccaagcattgactatcacct |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35650223 |
ggatctcttgcaattgcccaagcattgactattacct |
35650187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 35678300 - 35678267
Alignment:
| Q |
121 |
tctcttgcaattgcccaagcattgactatcacct |
154 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
35678300 |
tctcttgcaattgcccaagcattgactattacct |
35678267 |
T |
|
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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 7154535 - 7154500
Alignment:
| Q |
11 |
ttcttccagcaccaaaaggaatgtactcaaaattat |
46 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7154535 |
ttcttccagcaccaaaaggaatatactcaaaattat |
7154500 |
T |
|
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