View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4928_2D_high_12 (Length: 209)
Name: NF4928_2D_high_12
Description: NF4928_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_2D_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 224900 - 225095
Alignment:
| Q |
1 |
gcaagcaaaatactaactaaacttacatccccttcatgtgcaaggcgtttaagtaagcaaaaggtatgctgattttcttccaaattgtcaagaacagcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
224900 |
gcaagcaaaatactaactaaacttacatccccttcatgtgcaaggcgtttaagtaagcaaaaggtatgctgattttcttccaaattgtcaagaacagcca |
224999 |
T |
|
| Q |
101 |
gccagattcgagatacaagttcatgggctacgtctcttgacttgccgcaagcaataaactgatctgctaaataaaaacaaaatgaatgatcaaagt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
225000 |
gccagattcgagatacaagttcatgggctacgtctcttgacttgccgcaagcaataaactgatctgctaaataaaaacaaaatgaatgatcaaagt |
225095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University