View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_2D_low_1 (Length: 613)
Name: NF4928_2D_low_1
Description: NF4928_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_2D_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 202 - 596
Target Start/End: Original strand, 13227268 - 13227663
Alignment:
| Q |
202 |
taatggtctagattgttagtactaaccttttttaaaaattctaccacattatgttatccaatttttgtgcactatgtctaagaaatggagattttcaatg |
301 |
Q |
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| T |
13227268 |
taatggtctagattgtttggactaacctttttcaaaaattctaccacattatgttatccaatttttgtgcactatgtctaagagatgaagattttcaatg |
13227367 |
T |
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| Q |
302 |
ttgtgacaaaattcggtgcatgggtaggtgtactattgcgcatgggtctttattttcactttcacaagttgcnnnnnnnn-gtccatcatcttcaaatat |
400 |
Q |
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| T |
13227368 |
ttgtgacaaaattcggtgcatgggtaggtgtactattgcgcatgggtctttattttcactttcacaagttgctttttttttgtccatcatcttcaaatat |
13227467 |
T |
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| Q |
401 |
tttatgatggcccacttaaaatattgtcaattatcacaactactttgaatcatgatgatggtgactttgaatttttgataatcctttaaagtaaaacgag |
500 |
Q |
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| T |
13227468 |
tttatgatggcccacttaaaatattgtcaattatcacaactactttgaatcatgatgatggtgactttgaatttttgataatcctttaaagtaaaacgag |
13227567 |
T |
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| Q |
501 |
tggaatgagttaaagctagtgtagtgtgtgtttggtcttattatggaactattaattacttaatcgtacatgataataataaaagggtgttgtttg |
596 |
Q |
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| T |
13227568 |
tggaatgagttaaagctagtgtagtgtgtgtttggtcttattatggaactattaattacttaatcgtacatgataataataaaagggtgttgtttg |
13227663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 13227039 - 13227245
Alignment:
| Q |
18 |
acatcactttgatacataactttgatg-atgctata----ttgatatgttaaggtgtggtgaaatgtggttgatttaggattaggagtgtttgacttgaa |
112 |
Q |
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| T |
13227039 |
acatcactttgatacataactttgatggatgctatatatattgatatgttaaggtgtggtgaaatgtggttgattttggattaggagtgtttgacttgaa |
13227138 |
T |
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| Q |
113 |
gacataatcaatagttcttagttgttgttttatgatatggttgcaaagtcattaaaacttt-gatgttatggtctagattgtttttgaagtaatggtcta |
211 |
Q |
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| T |
13227139 |
gacataatcaatagatcttagttgttgttttatgatatggttgcaaagacattaaaactttggatgttatggtctagattgtttttgaagtaatggtcta |
13227238 |
T |
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| Q |
212 |
gattgtt |
218 |
Q |
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| T |
13227239 |
gattgtt |
13227245 |
T |
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