View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_2D_low_18 (Length: 294)
Name: NF4928_2D_low_18
Description: NF4928_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_2D_low_18 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 2901905 - 2902198
Alignment:
| Q |
1 |
aatttattgtttgttaaaatgacgtaggtactcgaggggatttgaactttgtcccttaagattattaggtcatgtttttattactgaactgaaacctcat |
100 |
Q |
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| T |
2901905 |
aatttattgtttgttaaaatgacgtaggtactcgaggggatttgaactttgtcccttaagattattaggtcatgtttttattactgaactaaaacctcat |
2902004 |
T |
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| Q |
101 |
gaacagcgaaagagaacagtatatattaatgaaattaagagaaaatgattttcaccttgagattgggatcaagctttcctgacaaagctaaaagaagtgt |
200 |
Q |
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| T |
2902005 |
gaacagcgaaagagaacagtatatattaatgaaattaagagaaaatgattttcaccttgagattgggatcaagctttcctgacaaagctaaaagaagtgt |
2902104 |
T |
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| Q |
201 |
ggtctttccagaacttggaggaccaagaagaagtgtcatcctgcgaggtttgactattccacttacatctttgaggatagtcatatgtttcttt |
294 |
Q |
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| T |
2902105 |
ggtctttccagaacttggaggaccaagaagcagtgtcatcctgcgaggtttgactattccacttacatctttgaggatagtcatatgtttcttt |
2902198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 28 - 294
Target Start/End: Complemental strand, 2883078 - 2882812
Alignment:
| Q |
28 |
gtactcgaggggatttgaactttgtcccttaagattattaggtcatgtttttattactgaactgaaacctcatgaacagcgaaagagaacagtatatatt |
127 |
Q |
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| T |
2883078 |
gtactcgaggggatttgaactttctcccttaagattataaggtcaagtttttaccactgaactgaaaccccgtgaacagtgaaagagaacaatatatatt |
2882979 |
T |
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| Q |
128 |
aatgaaattaagagaaaatgattttcaccttgagattgggatcaagctttcctgacaaagctaaaagaagtgtggtctttccagaacttggaggaccaag |
227 |
Q |
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| T |
2882978 |
tgtgaaattaagagaaatttcttttcaccttgagattgggatcaagctttcctgacaaagccaaaagaagtgtggtctttccagaacttggaggaccaag |
2882879 |
T |
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| Q |
228 |
aagaagtgtcatcctgcgaggtttgactattccacttacatctttgaggatagtcatatgtttcttt |
294 |
Q |
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| T |
2882878 |
aagcagtgtcatcctgcgaggtttgactattccacttacatctttaaggatagtcatttgtttcttt |
2882812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 168 - 294
Target Start/End: Complemental strand, 2872825 - 2872699
Alignment:
| Q |
168 |
atcaagctttcctgacaaagctaaaagaagtgtggtctttccagaacttggaggaccaagaagaagtgtcatcctgcgaggtttgactattccacttaca |
267 |
Q |
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| T |
2872825 |
atcaagctttccagttaaggccaaaagaagtgtggtctttccggaacttggaggaccaagaagcagtgccatcctaccaggtttgactattccacttaca |
2872726 |
T |
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| Q |
268 |
tctttgaggatagtcatatgtttcttt |
294 |
Q |
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| T |
2872725 |
tctttaaggatagtcatatgtttcttt |
2872699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 272
Target Start/End: Original strand, 44226627 - 44226733
Alignment:
| Q |
166 |
ggatcaagctttcctgacaaagctaaaagaagtgtggtctttccagaacttggaggaccaagaagaagtgtcatcctgcgaggtttgactattccactta |
265 |
Q |
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| T |
44226627 |
ggatcaagctttccagataaggctaaaagaagtgtggtctttcctgaaccaggaggacctaaaagtagtgtcatcctacgaggtttaacgattccgctaa |
44226726 |
T |
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| Q |
266 |
catcttt |
272 |
Q |
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||||||| |
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| T |
44226727 |
catcttt |
44226733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 272
Target Start/End: Original strand, 44237425 - 44237531
Alignment:
| Q |
166 |
ggatcaagctttcctgacaaagctaaaagaagtgtggtctttccagaacttggaggaccaagaagaagtgtcatcctgcgaggtttgactattccactta |
265 |
Q |
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|||||||||||||| || || ||||| ||||| ||||||||||| |||| |||||||| | ||| ||||||||||| |||||||| || ||||| || | |
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| T |
44237425 |
ggatcaagctttccagataaggctaacagaagcgtggtctttcctgaaccaggaggacctaaaagtagtgtcatcctacgaggtttaacaattccgctaa |
44237524 |
T |
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| Q |
266 |
catcttt |
272 |
Q |
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| T |
44237525 |
catcttt |
44237531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 44214479 - 44214581
Alignment:
| Q |
168 |
atcaagctttcctgacaaagctaaaagaagtgtggtctttccagaacttggaggaccaagaagaagtgtcatcctgcgaggtttgactattccacttaca |
267 |
Q |
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||||||||||||||| ||||||||||| |||||||| ||||| |||| |||||||| | || | ||||||||| |||||||| | |||||||| ||| |
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| T |
44214479 |
atcaagctttcctgataaagctaaaagtagtgtggtttttcctgaaccaggaggacctaagagtaatgtcatcctacgaggtttaataattccactaaca |
44214578 |
T |
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| Q |
268 |
tct |
270 |
Q |
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||| |
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| T |
44214579 |
tct |
44214581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 39592837 - 39592926
Alignment:
| Q |
154 |
accttgagattgggatcaagctttcctgacaaagctaaaagaagtgtggtctttccagaacttggaggaccaagaagaagtgtcatcctg |
243 |
Q |
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| T |
39592837 |
acctttagcttgggatcaagtttgccagccaaagccaagagaagtgtggtctttccagaacttggaggtcccagaagcaatgtcatcctg |
39592926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 39568854 - 39568912
Alignment:
| Q |
166 |
ggatcaagctttcctgacaaagctaaaagaagtgtggtctttccagaacttggaggacc |
224 |
Q |
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| T |
39568854 |
ggatcaagttttccggccaaagccaataggagtgtggtttttccagaacttggaggacc |
39568912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 39584075 - 39584145
Alignment:
| Q |
154 |
accttgagattgggatcaagctttcctgacaaagctaaaagaagtgtggtctttccagaacttggaggacc |
224 |
Q |
| |
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||||| || ||||||||||| ||||| | ||| || ||||| ||||| || |||||||||||||||||||| |
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| T |
39584075 |
acctttagcttgggatcaagttttccagccaaggccaaaaggagtgttgtttttccagaacttggaggacc |
39584145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 42177690 - 42177746
Alignment:
| Q |
187 |
gctaaaagaagtgtggtctttccagaacttggaggaccaagaagaagtgtcatcctg |
243 |
Q |
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| T |
42177690 |
gctaaaagcaatgttgtttttccagaacctggaggacctagaaggagtgtcatcctg |
42177746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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