View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928_2D_low_19 (Length: 293)

Name: NF4928_2D_low_19
Description: NF4928_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928_2D_low_19
NF4928_2D_low_19
[»] scaffold0027 (2 HSPs)
scaffold0027 (18-189)||(54781-54952)
scaffold0027 (188-274)||(51321-51411)
[»] chr8 (8 HSPs)
chr8 (49-186)||(23387836-23387972)
chr8 (69-164)||(25334554-25334648)
chr8 (82-164)||(25568050-25568131)
chr8 (145-186)||(23340084-23340124)
chr8 (227-274)||(18450954-18451001)
chr8 (82-164)||(25298910-25298991)
chr8 (82-164)||(25437668-25437749)
chr8 (208-261)||(20684937-20684990)
[»] chr4 (3 HSPs)
chr4 (70-189)||(17506964-17507088)
chr4 (226-273)||(17265240-17265287)
chr4 (207-274)||(18600650-18600717)
[»] chr7 (2 HSPs)
chr7 (187-274)||(4007427-4007518)
chr7 (187-274)||(4012819-4012910)
[»] chr1 (2 HSPs)
chr1 (49-164)||(24650855-24650969)
chr1 (207-261)||(49331161-49331215)
[»] chr3 (4 HSPs)
chr3 (188-274)||(23330918-23331008)
chr3 (203-261)||(21314902-21314960)
chr3 (49-133)||(10917367-10917449)
chr3 (49-143)||(10922564-10922656)
[»] chr6 (2 HSPs)
chr6 (211-274)||(13255975-13256038)
chr6 (126-189)||(32925554-32925617)
[»] scaffold0039 (2 HSPs)
scaffold0039 (207-261)||(64607-64661)
scaffold0039 (207-261)||(65706-65760)
[»] scaffold0070 (1 HSPs)
scaffold0070 (82-147)||(21810-21874)
[»] scaffold1493 (1 HSPs)
scaffold1493 (82-164)||(1542-1623)


Alignment Details
Target: scaffold0027 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 54952 - 54781
Alignment:
Q  18 tcaaggtagttaagatagaaagtagttaaatagtttgttagttttttattgattacttgatcaccaagtaatgtacataagcttgtaaataagtatgatg 117  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54952 tcaagttagttaagatagaaagtagttaaatagtttgttagtttttgattgattacttgatcaccaagtaatgtacataagcttgtaaataagtatgatg 54853  T
Q  118 taaacatactttcattcctaatgagaataacaagtttacaatcaatagttcattctcttcttctctctcaat 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54852 taaacatactttcattcctaatgagaataacaagtttacaatcaatagttcattctcttcttctctctcaat 54781  T

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Target: scaffold0027; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 51411 - 51321
Alignment:
Q  188 atatcaagtgttcaaatacttagt----gtgatttgttattcattgttttggtttgagatattttagttttgtgatttagactgtgtattg 274  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51411 atatcaagtgttcaaatacttagttagtgtgatttgttattcattgttttggtttgagatattttagttttgtgatttagactgtgtattg 51321  T

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Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 49 - 186
Target Start/End: Complemental strand, 23387972 - 23387836
Alignment:
Q  49 agtttgttagttttttattgattacttgatcaccaagtaatgtacataagcttgtaaataagtatgatgtaaacatactttcattcctaatgagaataac 148  Q
    |||||||||| |||| |||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||| ||||||| | ||||| ||||||||    
T  23387972 agtttgttagcttttgattgattacttgataagcaagtaatgtacataagcttgtatataagtatgatgtaaacacactttcaatgctaattagaataac 23387873  T
Q  149 aagtttacaatcaatagttcattctcttcttctctctc 186  Q
    ||||||| |||||||| |||||| ||||||||||||||    
T  23387872 aagtttagaatcaatacttcatt-tcttcttctctctc 23387836  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 25334554 - 25334648
Alignment:
Q  69 attacttgatcaccaagtaatgtacataagcttgtaaataagtatgatgtaaacatactttcattcctaatgagaataacaagtttacaatcaata 164  Q
    |||||||| | | ||||||||||||||| ||||||| |||||||||| ||||||  | ||||||| |||||| ||||||||||||| |||||||||    
T  25334554 attacttgtttagcaagtaatgtacata-gcttgtatataagtatgacgtaaacccaatttcattgctaatgtgaataacaagttttcaatcaata 25334648  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 25568050 - 25568131
Alignment:
Q  82 caagtaatgtacataagcttgtaaataagtatgatgtaaacatactttcattcctaatgagaataacaagtttacaatcaata 164  Q
    ||||||||||||||| || |||| ||||||||||||||||   | ||||||| |||||| |||||| |||||| |||||||||    
T  25568050 caagtaatgtacata-gcatgtatataagtatgatgtaaatccaatttcattgctaatgtgaataaaaagttttcaatcaata 25568131  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 23340084 - 23340124
Alignment:
Q  145 taacaagtttacaatcaatagttcattctcttcttctctctc 186  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  23340084 taacaagtttacaatcaatagttcatt-tcttcttctctctc 23340124  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 18450954 - 18451001
Alignment:
Q  227 ttgttttggtttgagatattttagttttgtgatttagactgtgtattg 274  Q
    ||||||||||||| |||| ||||||||||||||||||| | |||||||    
T  18450954 ttgttttggtttgtgatagtttagttttgtgatttagattatgtattg 18451001  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 25298910 - 25298991
Alignment:
Q  82 caagtaatgtacataagcttgtaaataagtatgatgtaaacatactttcattcctaatgagaataacaagtttacaatcaata 164  Q
    ||||||||||||||| ||||||| |||  ||||||||||||  | |||||||  ||||| || |||||||||| |||||||||    
T  25298910 caagtaatgtacata-gcttgtatatacctatgatgtaaacccaatttcattgttaatgtgagtaacaagttttcaatcaata 25298991  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 25437668 - 25437749
Alignment:
Q  82 caagtaatgtacataagcttgtaaataagtatgatgtaaacatactttcattcctaatgagaataacaagtttacaatcaata 164  Q
    ||||||||||||||| ||||||| |||  ||||||||||||  | |||||||  ||||| || |||||||||| |||||||||    
T  25437668 caagtaatgtacata-gcttgtatatacctatgatgtaaacccaatttcattgttaatgtgagtaacaagttttcaatcaata 25437749  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 20684990 - 20684937
Alignment:
Q  208 tagtgtgatttgttattcattgttttggtttgagatattttagttttgtgattt 261  Q
    ||||||| ||||||||  |||||||||||| |||||| ||||||||| ||||||    
T  20684990 tagtgtgttttgttatcaattgttttggttggagataatttagttttatgattt 20684937  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 17507088 - 17506964
Alignment:
Q  70 ttacttgatcaccaagtaatgtacataagcttgtaaataagtatgatgtaaacatactttcattcctaatgagaataacaagtttacaatcaatagtt-- 167  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||||||||| |||||||||  |||||| |||||||||||||||||||||||||      
T  17507088 ttacttgatcagcaagtaatatacataagcttgtatataagtatgatgtaaacacactttcattgataatgataataacaagtttacaatcaatagttaa 17506989  T
Q  168 ---cattctcttcttctctctcaat 189  Q
        |||||||||||||||||||||    
T  17506988 ttatattctcttcttctctctcaat 17506964  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 273
Target Start/End: Complemental strand, 17265287 - 17265240
Alignment:
Q  226 attgttttggtttgagatattttagttttgtgatttagactgtgtatt 273  Q
    ||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  17265287 attgttttggtttaagatagtttagttttgtgatttagattgtgtatt 17265240  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 18600717 - 18600650
Alignment:
Q  207 ttagtgtgatttgttattcattgttttggtttgagatattttagttttgtgatttagactgtgtattg 274  Q
    |||||||||||||||||  ||||||||||| ||||||| ||||||| | |||||| || |||||||||    
T  18600717 ttagtgtgatttgttataaattgttttggtctgagatagtttagttctatgatttggattgtgtattg 18600650  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 4007427 - 4007518
Alignment:
Q  187 aatatcaagtgttcaaatact----tagtgtgatttgttattcattgttttggtttgagatattttagttttgtgatttagactgtgtattg 274  Q
    |||||||||||||||||||||    |||||||||||||| ||||||||||| |||||||||| |||||||||||||||| || |||||||||    
T  4007427 aatatcaagtgttcaaatactactttagtgtgatttgtttttcattgttttagtttgagatagtttagttttgtgatttggattgtgtattg 4007518  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 4012819 - 4012910
Alignment:
Q  187 aatatcaagtgttcaaatact----tagtgtgatttgttattcattgttttggtttgagatattttagttttgtgatttagactgtgtattg 274  Q
    |||||||||||||||||||||    |||||||||||||| ||||||||||| |||||||||| |||||||||||||||| || |||||||||    
T  4012819 aatatcaagtgttcaaatactactttagtgtgatttgtttttcattgttttagtttgagatagtttagttttgtgatttggattgtgtattg 4012910  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 24650855 - 24650969
Alignment:
Q  49 agtttgttagttttttattgattacttgatcaccaagtaatgtacataagcttgtaaataagtatgatgtaaacatactttcattcctaatgagaataac 148  Q
    ||||||||||||||| |||| ||||||| | | |||| |||||||||| ||||||| ||||| || ||||||||| | ||||||  |||||||||||||     
T  24650855 agtttgttagtttttgattggttacttgtttagcaagcaatgtacata-gcttgtatataaggattatgtaaacacattttcataactaatgagaataat 24650953  T
Q  149 aagtttacaatcaata 164  Q
    ||||||||||||||||    
T  24650954 aagtttacaatcaata 24650969  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 49331215 - 49331161
Alignment:
Q  207 ttagtgtgatttgttattcattgttttggtttgagatattttagttttgtgattt 261  Q
    |||||| ||||||||||| || | ||||||||| |||| ||||||||||||||||    
T  49331215 ttagtgggatttgttattaataggtttggtttgtgatagtttagttttgtgattt 49331161  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 274
Target Start/End: Original strand, 23330918 - 23331008
Alignment:
Q  188 atatcaagtgttcaaatactt----agtgtgatttgttattcattgttttggtttgagatattttagttttgtgatttagactgtgtattg 274  Q
    ||||||||||||| |||||||    ||||||||||||||||| |||||||||||||| ||  ||||||||||||||||  | |||||||||    
T  23330918 atatcaagtgttctaatactttgttagtgtgatttgttattcgttgttttggtttgatattgtttagttttgtgatttgaattgtgtattg 23331008  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 21314960 - 21314902
Alignment:
Q  203 atacttagtgtgatttgttattcattgttttggtttgagatattttagttttgtgattt 261  Q
    |||| |||||||||| ||| || |||||||| |||||||||| ||||||||||||||||    
T  21314960 atacatagtgtgattagttgttaattgtttttgtttgagatagtttagttttgtgattt 21314902  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 10917367 - 10917449
Alignment:
Q  49 agtttgttagttttttattgattacttgatcaccaagtaatgtacataagcttgtaaataagtatgatgtaaacatactttcatt 133  Q
    ||||||||||||| ||  |||||||||||| | |||||| |||  ||||| ||||| ||||||||||| |||||| |||||||||    
T  10917367 agtttgttagtttgtt--tgattacttgataaacaagtattgtgaataagtttgtatataagtatgatataaacacactttcatt 10917449  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 10922564 - 10922656
Alignment:
Q  49 agtttgttagttttttattgattacttgatcaccaagtaatgtacataagcttgtaaataagtatgatgtaaacatactttcattcctaatgaga 143  Q
    ||||||||||||| ||  |||||||||||| | |||||| |||  ||||| ||||| |||| |||||||||||||  ||||||||  ||||||||    
T  10922564 agtttgttagtttgtt--tgattacttgataaacaagtattgtgaataagtttgtatataaatatgatgtaaacacgctttcattattaatgaga 10922656  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 13256038 - 13255975
Alignment:
Q  211 tgtgatttgttattcattgttttggtttgagatattttagttttgtgatttagactgtgtattg 274  Q
    |||||||||||||  ||||||||||||||||||| ||||||||||||||||  | |||||||||    
T  13256038 tgtgatttgttataaattgttttggtttgagatagtttagttttgtgatttgaattgtgtattg 13255975  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 32925617 - 32925554
Alignment:
Q  126 ctttcattcctaatgagaataacaagtttacaatcaatagttcattctcttcttctctctcaat 189  Q
    |||||||| || ||||||||||||||||| |||||||| |  |||||| || ||||||||||||    
T  32925617 ctttcattgctgatgagaataacaagtttgcaatcaatggaacattctgtttttctctctcaat 32925554  T

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Target: scaffold0039 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 64607 - 64661
Alignment:
Q  207 ttagtgtgatttgttattcattgttttggtttgagatattttagttttgtgattt 261  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||||||| ||||    
T  64607 ttagtgtgatttgttataaattgttttggtttgagatagtttagttttgtaattt 64661  T

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Target: scaffold0039; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 65760 - 65706
Alignment:
Q  207 ttagtgtgatttgttattcattgttttggtttgagatattttagttttgtgattt 261  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||||||| ||||    
T  65760 ttagtgtgatttgttataaattgttttggtttgagatagtttagttttgtaattt 65706  T

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Target: scaffold0070 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 21874 - 21810
Alignment:
Q  82 caagtaatgtacataagcttgtaaataagtatgatgtaaacatactttcattcctaatgagaataa 147  Q
    ||||||||||||||| ||||||| |||||||||||||||||  | ||||||| |||||| ||||||    
T  21874 caagtaatgtacata-gcttgtatataagtatgatgtaaacccaatttcattgctaatgtgaataa 21810  T

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Target: scaffold1493 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 1623 - 1542
Alignment:
Q  82 caagtaatgtacataagcttgtaaataagtatgatgtaaacatactttcattcctaatgagaataacaagtttacaatcaata 164  Q
    ||||||||||||||| ||||||| |||  ||||||||||||  | |||||||  ||||| || |||||||||| |||||||||    
T  1623 caagtaatgtacata-gcttgtatatacctatgatgtaaacccaatttcattgttaatgtgagtaacaagttttcaatcaata 1542  T

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