View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_2D_low_2 (Length: 542)
Name: NF4928_2D_low_2
Description: NF4928_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_2D_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 214 - 526
Target Start/End: Original strand, 40103189 - 40103507
Alignment:
| Q |
214 |
aatggcattgtattaaaatgctcactgatgtctatttgtttaataagaaatgttagtactttatacttcataaacaaatgctcactaaaataagaaatgt |
313 |
Q |
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| T |
40103189 |
aatggcattgtattaaaatgctcactgatgtctatttgtttaataagaaatgttagtactttatacttcataaacaaatgctcactaaaataataaatgt |
40103288 |
T |
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| Q |
314 |
tgacacaaggatgctacttttgtatgataattgataagtgtattaaaaatatagaaatatgattggtaaatgaatt---nnnnnnnnnnnnnnnnttatg |
410 |
Q |
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| T |
40103289 |
tgacacaaggatgctacttttgtatgataattgataagtgtattaaaaatatagaaatatgattggtaaatgaattaaaaaaaaaaaaaaaaaagttatg |
40103388 |
T |
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| Q |
411 |
aatgtat---atcatgtattgaactagtttgatttgtttataaaattggaattgaattcattaatctcaatgtttttaatttataatctacatttgaatt |
507 |
Q |
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| T |
40103389 |
aatgtatgtaatcatgtattgaactagtttgatttgtttataaaattggaattgaattcattaatctcaatgtttttaatttataatctacatttgaatt |
40103488 |
T |
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| Q |
508 |
tatattgggtcagattgat |
526 |
Q |
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| T |
40103489 |
tatattgggtcagattgat |
40103507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 40102987 - 40103158
Alignment:
| Q |
19 |
gctattatcggcagaactcatttaagattaaaagcactaatctagaaaagaaagacacatattttcattatgttatttgtatttcaattaatggaaattt |
118 |
Q |
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| T |
40102987 |
gctattatcggcagaactcatttaagattaaaagcactaatctagaaaagaaagacacatattttcattatgttatttgtatttcaattaatggaaattt |
40103086 |
T |
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| Q |
119 |
gtggtgagattttccnnnnnnnngtaagaaaaaatttgtggtgagaataaaactactaatctagaaaattaag |
191 |
Q |
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| T |
40103087 |
gtggtgagattttcctttttttt-taagaaaaaatttgtggtgagaataaaactactaatctagaaaattaag |
40103158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 385
Target Start/End: Original strand, 40103155 - 40103192
Alignment:
| Q |
348 |
taagtgtattaaaaatatagaaatatgattggtaaatg |
385 |
Q |
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| T |
40103155 |
taagtgtattaaaaatatagaaatatgattggtaaatg |
40103192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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