View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_2D_low_20 (Length: 271)
Name: NF4928_2D_low_20
Description: NF4928_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_2D_low_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 224521 - 224774
Alignment:
| Q |
18 |
catcatatataaaggtctatatttttcaacataatttgtcttgtacatttaatatgctttgaaaatcttcagtttgctaataacctaaccaagcagatgg |
117 |
Q |
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| T |
224521 |
catcatatataaaggtctatatttttcaacataatttgtcttgtacatttaatatgctttgaaaatcttcagtttgctaataacctaaccaagcagatgg |
224620 |
T |
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| Q |
118 |
tattggctgaaacctacttttggcgcatgccaacatatcataataatctacatggttgaagcaatcacggaaatctgtaaaaagcttctcaaacaccctc |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
224621 |
tattggctgaaacctacttttggcacatgccaacatatcataataatctacatggttgaagcaatcacggaaatctgtaaaaagcttctcaaacaccctc |
224720 |
T |
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| Q |
218 |
cattgaactttgactgatctagtgtaaggatatggaagaaaaacctgctgaaag |
271 |
Q |
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| T |
224721 |
cattgaactttgactgatctagtgtaaggatatggaagaaaaacctgctgaaag |
224774 |
T |
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