View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_2D_low_28 (Length: 222)
Name: NF4928_2D_low_28
Description: NF4928_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_2D_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 32693576 - 32693772
Alignment:
| Q |
19 |
agaacaagtttgaagacccataccatgactttgaccattacaccattcaccagaaaaagaatcaccagtatagaacctataaacaccataaccatgtctc |
118 |
Q |
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| T |
32693576 |
agaacaagtttgaagacccataccatgactttgaccattacaccattcaccagaaaaagaatcaccagtatagaacctataaacaccataaccatgtctc |
32693675 |
T |
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| Q |
119 |
attccttttctatactgacccttatatctactccctctagcccaactctcaattccatatccatcatatcttccatcaacccagtcaccttcatatc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32693676 |
attccttttctatactgacccttatatctactccctctagcccaactctcaattccatatccatcatatcttccatcaacccaatcaccttcatatc |
32693772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 24238842 - 24239038
Alignment:
| Q |
19 |
agaacaagtttgaagacccataccatgactttgaccattacaccattcaccagaaaaagaatcaccagtatagaacctataaacaccataaccatgtctc |
118 |
Q |
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| T |
24238842 |
agaacaagattgaacaccaaaaccatgactctgtccattaaaccattccccagaataacaatcaccagtataaaatctataaacaccataaccatgtctc |
24238941 |
T |
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| Q |
119 |
attccttttctatactgacccttatatctactccctctagcccaactctcaattccatatccatcatatcttccatcaacccagtcaccttcatatc |
215 |
Q |
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| T |
24238942 |
aaaccttgtttataacaacccttatatctacttcccctagcccagctttcaattccataaccatcatattttccatcaacccaatcaccttcatatc |
24239038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 1586861 - 1587054
Alignment:
| Q |
22 |
acaagtttgaagacccataccatgactttgaccattacaccattcaccagaaaaagaatcaccagtatagaacctataaacaccataaccatgtctcatt |
121 |
Q |
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|||||| |||| ||| |||||||||| || ||||| |||||||||||| | || ||| |||||||| || |||||||||||| | |||| ||||| | |
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| T |
1586861 |
acaagtatgaacaccactaccatgactctgtccattcaaccattcaccagcataaacatctccagtataaaatctataaacaccaaacccatttctcaat |
1586960 |
T |
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| Q |
122 |
ccttttctatactgacccttatatctactccctctagcccaactctcaattccatatccatcatatcttccatcaacccagtcaccttcatatc |
215 |
Q |
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| T |
1586961 |
ccatctctatacatacccttatacctacttcccttactccaactctcaacaccaaaaccttcatatttcccgtcaacccaattcccttcatatc |
1587054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 17303611 - 17303695
Alignment:
| Q |
41 |
ccatgactttgaccattacaccattcaccagaaaaagaatcaccagtatagaacctataaacaccataaccatgtctcattcctt |
125 |
Q |
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| T |
17303611 |
ccatgactctgtccattagaccattctccagtataaacatccccagtataaaacctataaacaccaaacccatgtctcaatcctt |
17303695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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