View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_2D_low_3 (Length: 457)
Name: NF4928_2D_low_3
Description: NF4928_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_2D_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 31188665 - 31188913
Alignment:
| Q |
1 |
cagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagtagacaagttaaaatattagatcacctnn |
100 |
Q |
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| T |
31188665 |
cagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagtagacaagttaaaatattagatcacctaa |
31188764 |
T |
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| Q |
101 |
nnnnnnnnttcgatgctattatttttggagaatatgaatattttaatcatatacctaatattttcattacacatattaaggttatgacttaatcacggct |
200 |
Q |
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| T |
31188765 |
aaaaaaaattcgatgctattatttttggagaatatgaatattttaatcatatacctaatattttcattacacatattaaggatatgacttaatcacgact |
31188864 |
T |
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| Q |
201 |
tactagttacttccacataagataaaatcattttctagtatagcttgtt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31188865 |
tactagttacttccacataagataaaatcattttctagtatagcttgtt |
31188913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 31200472 - 31200720
Alignment:
| Q |
1 |
cagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagtagacaagttaaaatattagatcacctnn |
100 |
Q |
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| T |
31200472 |
cagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagtagacaagttaaaatattagatcacctaa |
31200571 |
T |
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| Q |
101 |
nnnnnnnnttcgatgctattatttttggagaatatgaatattttaatcatatacctaatattttcattacacatattaaggttatgacttaatcacggct |
200 |
Q |
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| T |
31200572 |
aaaaaaaattcgatgctattatttttggagaatatgaatattttaatcatatacctaatattttcattacacatattaaggatatgacttaatcacgact |
31200671 |
T |
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| Q |
201 |
tactagttacttccacataagataaaatcattttctagtatagcttgtt |
249 |
Q |
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| T |
31200672 |
tactagttacttccacataagataaaatcattttctagtatagcttgtt |
31200720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 245 - 441
Target Start/End: Complemental strand, 31188673 - 31188478
Alignment:
| Q |
245 |
ttgtttctgtttcggtgctgccttgcatattctttttgtgcttcatgtttctgtgttcctagtatcttttgctatgaatttgtttttagataggatggtt |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
31188673 |
ttgtttctgtttcggtgctgccttgcatattctttttgtgcttcatgtttctgtgttcctagtatcttttgctatgaatttgattttagatag-atggtt |
31188575 |
T |
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| Q |
345 |
tatgatggtttcttcttgctgcgttggcaactttgattgacgtagggaggatttttcttgtgggtaggtggatgtggaactttagtgtgggtgatgt |
441 |
Q |
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| T |
31188574 |
tatgatggtttcttcttgctgcgttggcaactttgatcgatgtagggaggttttttcttgtgggtaggtggatgtggaactttagtgtgggtgatgt |
31188478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 309 - 441
Target Start/End: Complemental strand, 31200450 - 31200318
Alignment:
| Q |
309 |
tcttttgctatgaatttgtttttagataggatggtttatgatggtttcttcttgctgcgttggcaactttgattgacgtagggaggatttttcttgtggg |
408 |
Q |
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| T |
31200450 |
tcttttgctatgaatttgtttttagataggatggtttatgatggtttcttcttgctgcgttggcaactttgattgatgtagggaggttttttcttgtggg |
31200351 |
T |
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| Q |
409 |
taggtggatgtggaactttagtgtgggtgatgt |
441 |
Q |
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| T |
31200350 |
taggtggatgtggaactttagtgtgggtgatgt |
31200318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 31170908 - 31170966
Alignment:
| Q |
191 |
aatcacggcttactagttacttccacataagataaaatcattttctagtatagcttgtt |
249 |
Q |
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||||||||||| ||||| |||||||||||| |||||| ||||||||||||||||||||| |
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| T |
31170908 |
aatcacggctttctagtgacttccacataaaataaaaacattttctagtatagcttgtt |
31170966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 280
Target Start/End: Complemental strand, 31200480 - 31200445
Alignment:
| Q |
245 |
ttgtttctgtttcggtgctgccttgcatattctttt |
280 |
Q |
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| T |
31200480 |
ttgtttctgtttcggtgctgccttgcatattctttt |
31200445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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