View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_2D_low_6 (Length: 429)
Name: NF4928_2D_low_6
Description: NF4928_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_2D_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 410
Target Start/End: Complemental strand, 9839724 - 9839327
Alignment:
| Q |
13 |
gtttggtgtttgtgtggcatactacttatgactattagtaatttgatttattttgcagaaatacatgaagatgagaaatacttacattcatctactggtt |
112 |
Q |
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| T |
9839724 |
gtttggtgtttgtgtggcatactacttatgactattagtaatttgatttattttgcagaaatacatgaagatgagaaatacttacattcatctactggtt |
9839625 |
T |
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| Q |
113 |
gagttaacagaggtaacgactttttcgatgatggtttaaagacaaaagacactattgttttggatagtctcccaaatatctttgttttggttggccagca |
212 |
Q |
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| T |
9839624 |
gagttaacagaggtaacgactttttcgaagatggtttaaagacaaaagacactattgttttggatagtctcccaaatatctttgttttggttggccagca |
9839525 |
T |
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| Q |
213 |
gtttgaccccaaatgcaagctcacacaaatggtagagtaaaaatgcttttgctactagcgtaatttagtgcatagtcttttcagaatccataataatgtt |
312 |
Q |
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| T |
9839524 |
gtttgacctcaaatgcaagctcacacaaatggtacagtaaaaatgcttttgctactagcgtaatttagtgcatagtcttttcagaatccataataatgtt |
9839425 |
T |
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| Q |
313 |
agctactctgaagttcatggaaattgagttagtggatttgcaattatctgcttccatcatcatacatgttgaaaattgagttggtacttggtggaaac |
410 |
Q |
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| T |
9839424 |
agctactctgaagttcatggaaattgagttagtggatttgcaattatctgcttccatcatcatacatgttgaaaattgagttggtacttggtggaaac |
9839327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 9839273 - 9839239
Alignment:
| Q |
323 |
aagttcatggaaattgagttagtggatttgcaatt |
357 |
Q |
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| T |
9839273 |
aagttcatggaaattgagttagtggatttggaatt |
9839239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 240 - 365
Target Start/End: Complemental strand, 6852759 - 6852634
Alignment:
| Q |
240 |
aatggtagagtaaaaatgcttttgctactagcgtaatttagtgcatagtcttttcagaatccataataatgttagctactctgaagttcatggaaattga |
339 |
Q |
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||||||| |||||| || ||||||||| | | |||||||||| |||||||||| |||||| || |||||||||||||||||||||| |||||||||||| |
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| T |
6852759 |
aatggtatggtaaaactggttttgctaccaacataatttagtggatagtctttttagaatctatgataatgttagctactctgaagtgcatggaaattga |
6852660 |
T |
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| Q |
340 |
gttagtggatttgcaattatctgctt |
365 |
Q |
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| T |
6852659 |
gttggtggatttggaattatctgctt |
6852634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 6852551 - 6852515
Alignment:
| Q |
321 |
tgaagttcatggaaattgagttagtggatttgcaatt |
357 |
Q |
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|||||| ||||||||||||||||||||||||| |||| |
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| T |
6852551 |
tgaagtccatggaaattgagttagtggatttggaatt |
6852515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 341 - 410
Target Start/End: Original strand, 24352080 - 24352149
Alignment:
| Q |
341 |
ttagtggatttgcaattatctgcttccatcatcatacatgttgaaaattgagttggtacttggtggaaac |
410 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24352080 |
ttagtggatttggaattatctgcttccatcatcatacatgttgaaaattgagttagtacttggtggaaac |
24352149 |
T |
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