View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928_2D_low_7 (Length: 390)

Name: NF4928_2D_low_7
Description: NF4928_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928_2D_low_7
NF4928_2D_low_7
[»] chr8 (1 HSPs)
chr8 (56-359)||(40458426-40458729)
[»] chr3 (4 HSPs)
chr3 (292-360)||(5665123-5665191)
chr3 (292-360)||(5686564-5686632)
chr3 (66-127)||(45646091-45646152)
chr3 (220-290)||(45646259-45646329)
[»] chr2 (1 HSPs)
chr2 (64-123)||(19998357-19998416)
[»] chr4 (2 HSPs)
chr4 (64-126)||(51300631-51300693)
chr4 (64-123)||(34721413-34721472)
[»] chr7 (1 HSPs)
chr7 (208-294)||(42296556-42296642)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 56 - 359
Target Start/End: Original strand, 40458426 - 40458729
Alignment:
Q  56 cacgcttaactcgaaaactattattgatattgttacttagccgtttaacaagtaccgttgttatgcttttgttcaagagttattgagaatagattgagag 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40458426 cacgcttaactcgaaaactattattgatattgttacttagccgtttaacaagtaccgtcgttatgcttttgttcaagagttattgagaatagattgagag 40458525  T
Q  156 gtgcatttatggtgctcttagataagggaaccttagtgcatattttttggtaaaattgaatgccgccaacgatgataagttcaagatttggaactgctct 255  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  40458526 gtgcatttatggtgctcttagataagggaaccttagagcatattttttggcaaaattggatgccgccaacgatgacaagttcaagatttggaactcctct 40458625  T
Q  256 ccaaaatatttgaattcttttattttaagtgactccttgtattaagagagtaaaaattgaatgaagataatgattttcacattaatgaaagtgaatgtag 355  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40458626 ccaaaatacttgaattcttttattttaagtgactccttgtattaagagagtgaaaattgaatgaagataatgattttcacattaatgaaagtgaatgtag 40458725  T
Q  356 aatg 359  Q
    ||||    
T  40458726 aatg 40458729  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 5665123 - 5665191
Alignment:
Q  292 ttgtattaagagagtaaaaattgaatgaagataatgattttcacattaatgaaagtgaatgtagaatga 360  Q
    ||||||||||||||| |||| ||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  5665123 ttgtattaagagagtgaaaaatgaataaagataatgattttctcattaatgaaagtgaatgtacaatga 5665191  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 5686564 - 5686632
Alignment:
Q  292 ttgtattaagagagtaaaaattgaatgaagataatgattttcacattaatgaaagtgaatgtagaatga 360  Q
    ||||||||||||||| |||| ||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  5686564 ttgtattaagagagtgaaaaatgaataaagataatgattttctcattaatgaaagtgaatgtacaatga 5686632  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 45646091 - 45646152
Alignment:
Q  66 tcgaaaactattattgatattgttacttagccgtttaacaagtaccgttgttatgcttttgt 127  Q
    ||||||||||||| ||||||||||||| ||||  |||||||||||| |||||||||||||||    
T  45646091 tcgaaaactattaatgatattgttactaagccagttaacaagtaccattgttatgcttttgt 45646152  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 45646259 - 45646329
Alignment:
Q  220 gccaacgatgataagttcaagatttggaactgctctccaaaatatttgaattcttttattttaagtgactc 290  Q
    |||||| |||| ||||||||||||||| ||| | | ||| || | ||||||||||||||||||||||||||    
T  45646259 gccaactatgacaagttcaagatttgggactccccaccagaagacttgaattcttttattttaagtgactc 45646329  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 19998357 - 19998416
Alignment:
Q  64 actcgaaaactattattgatattgttacttagccgtttaacaagtaccgttgttatgctt 123  Q
    |||| |||||||||||||||||||||||| ||||  |||||||||||| ||| |||||||    
T  19998357 actcaaaaactattattgatattgttactaagccagttaacaagtaccattgctatgctt 19998416  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 51300693 - 51300631
Alignment:
Q  64 actcgaaaactattattgatattgttacttagccgtttaacaagtaccgttgttatgcttttg 126  Q
    ||||||||| ||||||||||||||||||| |  || |||||||||||| |||||||| |||||    
T  51300693 actcgaaaattattattgatattgttactaaatcggttaacaagtaccattgttatggttttg 51300631  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 34721413 - 34721472
Alignment:
Q  64 actcgaaaactattattgatattgttacttagccgtttaacaagtaccgttgttatgctt 123  Q
    |||||||||||||||||||||||||| || || || |||||||||||  ||| |||||||    
T  34721413 actcgaaaactattattgatattgtttctaagacgattaacaagtactattgctatgctt 34721472  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 42296556 - 42296642
Alignment:
Q  208 aaattgaatgccgccaacgatgataagttcaagatttggaactgctctccaaaatatttgaattcttttattttaagtgactccttg 294  Q
    |||||| |||| |||| | |||| || |||||||||||| |||   |||  ||| |||||||||||||| |||||||||||||||||    
T  42296556 aaattggatgctgccagcaatgacaaattcaagatttgggactctcctctgaaagatttgaattcttttcttttaagtgactccttg 42296642  T

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