View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_high_17 (Length: 378)
Name: NF4928_high_17
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 8339358 - 8338997
Alignment:
| Q |
1 |
cgagttcatgaaggtggggtccaatggcagcacgaacccaagtctctaccgaatattcacgaaacttatcgtccgagaaggaatgaacacagctgagact |
100 |
Q |
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| T |
8339358 |
cgagttcatgaaggtggggtccaatggcagcacgaacccaagtctctacggaatattcacgaaacttatcgtccgtgaaggaatgaacacagctgagact |
8339259 |
T |
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| Q |
101 |
catcttctgaatggcacggggattacgtaggagagccaggacaacgttaactagaagagcgaaactcttgaaacgctccgctggttggtcgacatactca |
200 |
Q |
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| T |
8339258 |
catcttctgaatggcacggggattacgtaggagagccaggacaccgttaactagaagagcgaaactcttgaaacgctccgctggttggtcgacatactca |
8339159 |
T |
|
| Q |
201 |
tgggagtcatcggagaagtgaagaacggagagatgctgccagaggtggcgccaccggctagaaaggcgagcggtggaaactgaggtttttgtagggagga |
300 |
Q |
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| T |
8339158 |
tgggagtcatcggagaagtgaagaacggagagatgctgccagaggtggcgccaccggctagaaagtcgagcggtggaaactgaggtttttgtagggagga |
8339059 |
T |
|
| Q |
301 |
atgagaggatatggttcaaaacaccgtccggtaagtagctgattctgtcttcgttttcttct |
362 |
Q |
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| T |
8339058 |
atgaaaggatatggttcaaaacaccgtcgggtaagtagctgattctgtcttcgttttcttct |
8338997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 17468270 - 17468207
Alignment:
| Q |
3 |
agttcatgaaggtggggtccaatggcagcacgaacccaagtctctaccgaatattcacgaaact |
66 |
Q |
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| T |
17468270 |
agttcttgaagatggggaccaatggcagcacgaacccaattatcaacagaatattcacgaaact |
17468207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 4453849 - 4453781
Alignment:
| Q |
104 |
cttctgaatggcacggggattacgtaggagagccaggacaacgttaactagaagagcgaaactcttgaa |
172 |
Q |
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| T |
4453849 |
cttccgaatggcgcggggattacggaggagagcaagcacaccattaactaaaagagcgaagctcctgaa |
4453781 |
T |
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