View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928_high_20 (Length: 353)

Name: NF4928_high_20
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928_high_20
NF4928_high_20
[»] chr8 (2 HSPs)
chr8 (1-334)||(43165016-43165349)
chr8 (1-47)||(41311338-41311384)
[»] chr2 (2 HSPs)
chr2 (1-46)||(21430161-21430206)
chr2 (4-41)||(21426470-21426507)
[»] chr7 (4 HSPs)
chr7 (1-46)||(28180514-28180559)
chr7 (154-228)||(30120435-30120509)
chr7 (1-189)||(30125292-30125480)
chr7 (3-44)||(30131251-30131292)
[»] scaffold1051 (1 HSPs)
scaffold1051 (1-31)||(2009-2039)
[»] chr5 (1 HSPs)
chr5 (154-231)||(29261124-29261201)
[»] chr4 (1 HSPs)
chr4 (1-29)||(45366195-45366223)


Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 43165016 - 43165349
Alignment:
Q  1 attagctctcaatgagaaaatctccaagtcaatcgaactagataccaatggatgatattcataggaccccaaaactaccgtgtaatcatagcttgactca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43165016 attagctctcaatgagaaaatctccaagtcaatcgaactagataccaatggatgatattcataggaccccaaaactaccgtgtaatcatagcttgacaca 43165115  T
Q  101 tcgtatccgaaaccatgtagcattttgaaagtatccttattggaattggagacaggtatttgtttgtggatgcctgtggatggattccatatgtagaagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43165116 tcgtatccgaaaccatgtagcattttgaaagtatccttattggaattggagacaggtatttgtttgtggatgcctgtggatggattccatatgtagaagt 43165215  T
Q  201 ctctgtaagagtttaaaaacagaaaccctctacaaattcaggacgagtttggggatgcaaaaactcaggccttggtgaaaatgcagaatcatcgtcaagc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43165216 ctctgtaagagtttaaaaacagaaaccctctacaaattcaggacgagtttggggatgcaaaaactcaggccttggtgaaaatgcagaatcatcgtcaagc 43165315  T
Q  301 catgcatgaaaatctatggatagggtttcagaat 334  Q
    ||||||||||||||||||||||||||||||||||    
T  43165316 catgcatgaaaatctatggatagggtttcagaat 43165349  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41311338 - 41311384
Alignment:
Q  1 attagctctcaatgagaaaatctccaagtcaatcgaactagatacca 47  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||    
T  41311338 attacctctcaatgagaaaatctccaagtcaattgaactagatacca 41311384  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21430206 - 21430161
Alignment:
Q  1 attagctctcaatgagaaaatctccaagtcaatcgaactagatacc 46  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||    
T  21430206 attagctctcaatgagaaaatctctaagtcaattgaactagatacc 21430161  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 21426507 - 21426470
Alignment:
Q  4 agctctcaatgagaaaatctccaagtcaatcgaactag 41  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  21426507 agctctcaatgagaaaatcttcaagtcaattgaactag 21426470  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28180514 - 28180559
Alignment:
Q  1 attagctctcaatgagaaaatctccaagtcaatcgaactagatacc 46  Q
    |||||||||||||||||||||||| || ||||| ||||||||||||    
T  28180514 attagctctcaatgagaaaatctctaattcaattgaactagatacc 28180559  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 30120435 - 30120509
Alignment:
Q  154 aggtatttgtttgtggatgcctgtggatggattccatatgtagaagtctctgtaagagtttaaaaacagaaaccc 228  Q
    |||||||||||||||||  || ||||||||||||||||  |||||| || ||| |||||  ||||||| ||||||    
T  30120435 aggtatttgtttgtggactccggtggatggattccatagatagaagcctttgtcagagtgcaaaaacacaaaccc 30120509  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 30125292 - 30125480
Alignment:
Q  1 attagctctcaatgagaaaatctccaagtcaatcgaactagataccaatg-gatgatattcataggaccccaaaactaccgtgtaatcatagcttgactc 99  Q
    |||||||||||||| |||||||||||||||||| ||| ||| ||  | ||  ||  ||||  ||||||||||||| |||  |||||| ||  ||||||      
T  30125292 attagctctcaatgggaaaatctccaagtcaattgaattag-tattactgtaattgtatttgtaggaccccaaaagtactatgtaattatcacttgacag 30125390  T
Q  100 atcgtatccgaaaccatgtagcattttgaaagtatccttattggaattggagacaggtatttgtttgtggatgcctgtggatggattcca 189  Q
     |||||||||||||||   ||||  ||||||  ||  ||||| |||||||| ||| ||||||||| |||||  || ||||||||||||||    
T  30125391 gtcgtatccgaaaccaaagagcaacttgaaataattgttattagaattggacacaagtatttgttcgtggaaaccagtggatggattcca 30125480  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 30131251 - 30131292
Alignment:
Q  3 tagctctcaatgagaaaatctccaagtcaatcgaactagata 44  Q
    |||||||||||||||||||| |||||||||  ||||||||||    
T  30131251 tagctctcaatgagaaaatccccaagtcaagtgaactagata 30131292  T

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Target: scaffold1051 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 2009 - 2039
Alignment:
Q  1 attagctctcaatgagaaaatctccaagtca 31  Q
    |||||||||||||||||||||||||||||||    
T  2009 attagctctcaatgagaaaatctccaagtca 2039  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 29261201 - 29261124
Alignment:
Q  154 aggtatttgtttgtggatgcctgtggatggattccatatgtagaagtctctgtaagagtttaaaaacagaaaccctct 231  Q
    |||||||||||||||||  || || |||||||||||||  |||||| || ||| |||||  ||||||| |||||||||    
T  29261201 aggtatttgtttgtggactccggttgatggattccatagatagaagcctttgtcagagtgcaaaaacacaaaccctct 29261124  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 45366195 - 45366223
Alignment:
Q  1 attagctctcaatgagaaaatctccaagt 29  Q
    |||||||||||||||||||||||||||||    
T  45366195 attagctctcaatgagaaaatctccaagt 45366223  T

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