View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_high_24 (Length: 290)
Name: NF4928_high_24
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 23198031 - 23197857
Alignment:
| Q |
11 |
cagagagtgcatggtgaaacacaaggttgcaaaagtggatgagtaagaaaaggaagtcaatgaggtgaaggcaagtgggatagttaacaatatcatgaga |
110 |
Q |
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| T |
23198031 |
cagagagtgcatggtcaaacacaaggttgcaaaagtggatgagtaagaaaaggaagtcaatgaggtaaaggcaagtgggatagttaacaatatcatgaga |
23197932 |
T |
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| Q |
111 |
gcttcaaataatgcggttgagtctccttcaaaagaatcaaatgttgatgttgttgtgtagtctgtagatgtctgt |
185 |
Q |
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| T |
23197931 |
gcttcggataatgtggttgagtctccttcaaaagaatcatatgttgatgttgttgtgtagtttcgagatgtctgt |
23197857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 36 - 244
Target Start/End: Complemental strand, 23196647 - 23196440
Alignment:
| Q |
36 |
gttgcaaaagtggatgagtaagaaaaggaagtcaatgaggtgaaggcaagtgggatagttaacaatatcatgagagcttcaaataatgcggttgagtctc |
135 |
Q |
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| T |
23196647 |
gttgcgaatgtggatgagaaagaaaaggaagtcaataaagtgaaggcaggtgggatagttaacaatatcatgagagcttcggataatgcggttgagtctc |
23196548 |
T |
|
| Q |
136 |
cttcaaaagaatcaaatgttgatgttgttgtgtagtctgtagatgtctgtnnnnnnnnnttcaaggttccttacctatgttgaaactaacatataaaata |
235 |
Q |
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| T |
23196547 |
cttcaaaagaatcaaatgttgatgttgttgtgtagtctgtagatgtttgt-aaaaaaatttcaaggttccttacctatgttgaaactaccatatagaata |
23196449 |
T |
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| Q |
236 |
ttgttaaag |
244 |
Q |
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||||||||| |
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| T |
23196448 |
ttgttaaag |
23196440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 166
Target Start/End: Complemental strand, 24591548 - 24591425
Alignment:
| Q |
42 |
aaagtggatgagtaagaaaaggaagtcaatgaggtgaaggcaagtgggatagttaacaatatcatgagagcttcaaataatgcggttgagtctccttcaa |
141 |
Q |
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|||||||||||| |||| ||||||| ||| |||||||||||||||| ||||||||||||||| |||||||| | |||||| ||||||||||||||||| |
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| T |
24591548 |
aaagtggatgaggaagataaggaaggcaaggaggtgaaggcaagtgagatagttaacaatattatgagagcat-ggataatgtggttgagtctccttcaa |
24591450 |
T |
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| Q |
142 |
aagaatcaaatgttgatgttgttgt |
166 |
Q |
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|||||||| |||||||||||||||| |
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| T |
24591449 |
aagaatcatatgttgatgttgttgt |
24591425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 11197771 - 11197813
Alignment:
| Q |
72 |
gaggtgaaggcaagtgggatagttaacaatatcatgagagctt |
114 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||| |
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| T |
11197771 |
gaggtgaaggcaagtgacatagttaacaatattatgagagctt |
11197813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 27665244 - 27665350
Alignment:
| Q |
41 |
aaaagtggatgagtaagaaaaggaagtcaatgaggtgaaggcaagtgggatagttaacaatatcatgagagcttcaaataatgcggttgagtctccttca |
140 |
Q |
| |
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|||||| |||||| ||||||| |||| || ||||||||||| |||| ||||||||||| ||||||| ||||| | |||| |||| ||||| ||||| |
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| T |
27665244 |
aaaagtagatgagaaagaaaaataagtgaaggaggtgaaggctagtgacatagttaacaaaatcatgacagcttgggacaatgtggttaagtcttcttca |
27665343 |
T |
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| Q |
141 |
aaagaat |
147 |
Q |
| |
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|||||| |
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| T |
27665344 |
taagaat |
27665350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 12340450 - 12340334
Alignment:
| Q |
41 |
aaaagtggatgagtaagaaaaggaagtcaatgaggtgaaggcaagtgggatagttaacaatatcatgagagcttcaaataatgcggttgagtctccttca |
140 |
Q |
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||||||||||| | | || || ||||| |||||||||||| ||||| |||| ||||||||||| ||||||||| | |||||| ||||||||||| | || |
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| T |
12340450 |
aaaagtggatgggaaggataatgaagtgaatgaggtgaagcaaagtgtgatatttaacaatatcgtgagagcttaagataatgtggttgagtctcttaca |
12340351 |
T |
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| Q |
141 |
aaagaatcaaatgttga |
157 |
Q |
| |
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||||||||| ||||||| |
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| T |
12340350 |
aaagaatcatatgttga |
12340334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 11273621 - 11273663
Alignment:
| Q |
72 |
gaggtgaaggcaagtgggatagttaacaatatcatgagagctt |
114 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
11273621 |
gaggtgaaggcaggtgacatagttaacaatatcatgagagctt |
11273663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 28607552 - 28607633
Alignment:
| Q |
73 |
aggtgaaggcaagtgggatagttaacaatatcatgagagcttcaaataatgcggttgagtctccttcaaaagaatcaaatgt |
154 |
Q |
| |
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||||||| |||||| |||||||||||| ||||||||||||| || |||| ||| |||||||||| |||||||||| |||| |
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| T |
28607552 |
aggtgaaaacaagtgagatagttaacaacatcatgagagcttgaagtaatatggtagagtctccttaaaaagaatcatatgt |
28607633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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