View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928_high_32 (Length: 246)

Name: NF4928_high_32
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928_high_32
NF4928_high_32
[»] chr7 (1 HSPs)
chr7 (21-239)||(14710572-14710790)
[»] chr2 (3 HSPs)
chr2 (20-239)||(1925040-1925259)
chr2 (21-230)||(25815198-25815407)
chr2 (21-239)||(19704714-19704929)
[»] chr5 (2 HSPs)
chr5 (21-239)||(22370669-22370888)
chr5 (20-239)||(19304541-19304760)
[»] chr6 (1 HSPs)
chr6 (41-239)||(16811101-16811299)
[»] chr3 (1 HSPs)
chr3 (21-239)||(29899685-29899903)
[»] chr1 (6 HSPs)
chr1 (21-239)||(14715033-14715251)
chr1 (23-239)||(16765094-16765310)
chr1 (74-224)||(22002125-22002275)
chr1 (74-224)||(22008396-22008546)
chr1 (80-239)||(13246252-13246411)
chr1 (22-59)||(18491417-18491454)
[»] scaffold0021 (1 HSPs)
scaffold0021 (21-239)||(156-374)
[»] chr8 (3 HSPs)
chr8 (21-239)||(19463376-19463593)
chr8 (21-239)||(19561055-19561272)
chr8 (21-59)||(18394730-18394768)
[»] scaffold0285 (1 HSPs)
scaffold0285 (20-239)||(8951-9170)
[»] chr4 (1 HSPs)
chr4 (20-59)||(17735975-17736014)
[»] scaffold0047 (1 HSPs)
scaffold0047 (23-59)||(57679-57715)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 14710572 - 14710790
Alignment:
Q  21 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||||||||    
T  14710572 cactacaacattttggccctacgacaacgcctaaattttggaaggtaaaaaaaccgttttggtagagtcccatgaacaacgattttctgattctgttgta 14710671  T
Q  121 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14710672 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgagaacggatttttgtttgttattttcgtcaacacgta 14710771  T
Q  221 ttaaccgttccagtataat 239  Q
    |||||||||| ||||||||    
T  14710772 ttaaccgttctagtataat 14710790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 1925259 - 1925040
Alignment:
Q  20 tcactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||||||||||||||    
T  1925259 tcactacaacattttggccctacgacaacgcctaaattttggaaggtaaaaaaaccgttttggtagagtcccatgaacaacgattttctgattctgttgt 1925160  T
Q  120 aatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  1925159 aatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgagaacagatttttgtttgttattttcgtcaacacgt 1925060  T
Q  220 attaaccgttccagtataat 239  Q
    ||||||||||| ||||||||    
T  1925059 attaaccgttctagtataat 1925040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 230
Target Start/End: Complemental strand, 25815407 - 25815198
Alignment:
Q  21 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         || ||  |||||||||||| ||||||||||||||||| ||||||     
T  25815407 cactacaacattttggccctacgacaacgcctaaattttggaaggtaaaaaaattgttttcatagagtcccatggacaacgattttctgattttgttgtg 25815308  T
Q  121 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 220  Q
     |||| |||  ||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||    
T  25815307 gtaggatatgctattttttcaatttatttgtaacaactcaaaagtgttgtggtataagaaacgagaacggatttttatttgttatttttgtcaacatgta 25815208  T
Q  221 ttaaccgttc 230  Q
    ||||| ||||    
T  25815207 ttaactgttc 25815198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 19704714 - 19704929
Alignment:
Q  21 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 120  Q
    |||||||||||||||| ||    |||||||||||||||||||||||       ||||  || |||||||||||| ||||||||||||||||| |||||||    
T  19704714 cactacaacattttggtcc----acaacgcctaaattttggaaggtaaaaaaaccgttctgatagagtcccatggacaacgattttctgattttgttgta 19704809  T
Q  121 atagggtataatattttttcaatttattc-gtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgt 219  Q
     ||  |||| ||||||||| | ||| ||  ||||| |||| |||||||||||||||||||||| | ||||||||||| |||||||||| |||||||| ||    
T  19704810 gtaatgtatgatattttttaatttttttttgtaacgactcaaaagcgttgtggtataagaaacaagaacggatttttatttgttatttccgtcaacatgt 19704909  T
Q  220 attaaccgttccagtataat 239  Q
    |||||| ||||  |||||||    
T  19704910 attaactgttctggtataat 19704929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 22370669 - 22370888
Alignment:
Q  21 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 120  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||       |||| |||||||||||||||||||||||||||||||||| |||||||    
T  22370669 cactacaacattttgaccctacgacaacgcctaaattttgaaaggtaaaaaaaccgttttggtagagtcccatgaacaacgattttctgattatgttgta 22370768  T
Q  121 atagggtataatatttt-ttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgt 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22370769 atagggtataatatttttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgagaacggatttttgtttgttattttcgtcaacacgt 22370868  T
Q  220 attaaccgttccagtataat 239  Q
    ||||||| ||| ||||||||    
T  22370869 attaaccattctagtataat 22370888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 19304541 - 19304760
Alignment:
Q  20 tcactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgt 119  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||         ||  ||||||||| ||||| ||||||||||||| |||||||| |    
T  19304541 tcactacaatattttggccctacaacaacgcctaaattttggaaggtaaaaaaattgttctggtagagtaccatggacaacgattttctaattctgtttt 19304640  T
Q  120 aatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgt 219  Q
    |||||  ||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||| |     
T  19304641 aatagcatatgatattttttcaatttatttgtaacaactcaaaagcgttgtggtataagaaacgagaacagatttttatttgttatttttgtcaacatgc 19304740  T
Q  220 attaaccgttccagtataat 239  Q
    |||||| ||||  |||||||    
T  19304741 attaactgttctggtataat 19304760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 41 - 239
Target Start/End: Complemental strand, 16811299 - 16811101
Alignment:
Q  41 acgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgtaatagggtataatattttttc 140  Q
    |||| |||||||||||||||||||||       ||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||    
T  16811299 acgataacgcctaaattttggaaggtaaaaaaaccgtcttggtagagtcccatggacaacgattttctgattatgttgtaataggatataatattttttc 16811200  T
Q  141 aatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgtattaaccgttccagtataat 239  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  16811199 aatttattcgtaacaactcgaaagcgttgtggtataagaaacgagaacggatttttgtttgttatattcgtcaatacgtattaaccgttctagtataat 16811101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 29899685 - 29899903
Alignment:
Q  21 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||       ||||| ||||||||||| ||| ||||||||||||| ||| |||||||    
T  29899685 cactacaacattttggccctacgacaacgcctaaattttggaaagtaaaaaaaccgtcctggtagagtccgatgcacaacgattttctaattttgttgta 29899784  T
Q  121 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 220  Q
     |||||||  ||||||||| ||||| ||  |||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||| |||    
T  29899785 ttagggtaggatattttttaaatttttttataacaactcgaaagcgttgtggtataagaaacgagaacggatttttatttattactttcgtcaacatgta 29899884  T
Q  221 ttaaccgttccagtataat 239  Q
    ||||| ||||  |||||||    
T  29899885 ttaactgttctggtataat 29899903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 14715251 - 14715033
Alignment:
Q  21 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||       ||||| ||||||||||| ||| ||||||||||||| ||| |||||||    
T  14715251 cactacaacattttggccctacgacaacgcctaaattttggaaagtaaaaaaaccgtcctggtagagtccgatgcacaacgattttctaattttgttgta 14715152  T
Q  121 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 220  Q
     |||||||  ||||||||| ||||| ||  |||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||| |||    
T  14715151 ttagggtaggatattttttaaatttttttataacaactcgaaagcgttgtggtataagaaacgagaacggatttttatttattactttcgtcaacatgta 14715052  T
Q  221 ttaaccgttccagtataat 239  Q
    ||||| ||||  |||||||    
T  14715051 ttaactgttctggtataat 14715033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 16765310 - 16765094
Alignment:
Q  23 ctacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgtaat 122  Q
    ||||||||||||||| ||||||||||||||||||||||||||||         ||  ||||||||||||||| |||||||||||||||||||||| || |    
T  16765310 ctacaacattttggctctacgacaacgcctaaattttggaaggtaaaaaaattgttctggtagagtcccatggacaacgattttctgattctgttttagt 16765211  T
Q  123 agggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgtatt 222  Q
    || |||| ||||||||| |||||||| |||||||||  |||||||||||||||||||||||| ||||||||||| |||||||||||  |||||| |||||    
T  16765210 agcgtatgatattttttaaatttatttgtaacaactgaaaagcgttgtggtataagaaacgagaacggatttttatttgttatttttatcaacatgtatt 16765111  T
Q  223 aaccgttccagtataat 239  Q
    ||||||||  |||||||    
T  16765110 aaccgttctggtataat 16765094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 22002125 - 22002275
Alignment:
Q  74 ccgtcttggtagagtcccatgaacaacgattttctgattctgttgtaatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggt 173  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||||||| |||||||| ||||||||| ||||| || ||||| |||| ||||||||||| |    
T  22002125 ccgtcctggtagagtcccatggacaacgattttctgattttgttgtagtagggtatgatattttttaaatttttttgtaacgactcaaaagcgttgtgat 22002224  T
Q  174 ataagaaacgaaaacggatttttgtttgttattttcgtcaacacgtattaa 224  Q
    ||||||||| | ||||||||||| ||||||||||||||||||| |||||||    
T  22002225 ataagaaacaagaacggatttttatttgttattttcgtcaacatgtattaa 22002275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 22008396 - 22008546
Alignment:
Q  74 ccgtcttggtagagtcccatgaacaacgattttctgattctgttgtaatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggt 173  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||||||| |||||||| ||||||||| ||||| || ||||| |||| ||||||||||| |    
T  22008396 ccgtcctggtagagtcccatggacaacgattttctgattttgttgtagtagggtatgatattttttaaatttttttgtaacgactcaaaagcgttgtgat 22008495  T
Q  174 ataagaaacgaaaacggatttttgtttgttattttcgtcaacacgtattaa 224  Q
    ||||||||| | ||||||||||| ||||||||||||||||||| |||||||    
T  22008496 ataagaaacaagaacggatttttatttgttattttcgtcaacatgtattaa 22008546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 80 - 239
Target Start/End: Original strand, 13246252 - 13246411
Alignment:
Q  80 tggtagagtcccatgaacaacgattttctgattctgttgtaatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataaga 179  Q
    ||||||||| ||||| |||||||||||||||||||| |||| || ||||| |||||||||||||||||| |||||||||| ||||| |||| || |||||    
T  13246252 tggtagagttccatggacaacgattttctgattctgctgtagtaaggtatgatattttttcaatttatttgtaacaactcaaaagcattgtagtttaaga 13246351  T
Q  180 aacgaaaacggatttttgtttgttattttcgtcaacacgtattaaccgttccagtataat 239  Q
    |||  ||| | |||||| ||||||||||| |||| || |||||||| ||||  |||||||    
T  13246352 aacataaatgaatttttatttgttatttttgtcagcatgtattaactgttctggtataat 13246411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 18491454 - 18491417
Alignment:
Q  22 actacaacattttggccctacgacaacgcctaaatttt 59  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  18491454 actacaacattttgggcctacgacaacgcctaattttt 18491417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 374 - 156
Alignment:
Q  21 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         ||  ||||||||| ||||| ||||||||||||| |||||||| ||    
T  374 cactacaacattttggccctacgacaacgcctaaattttggaaggtaaaaatattgttctggtagagtaccatggacaacgattttctaattctgtttta 275  T
Q  121 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 220  Q
    ||||  ||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||| || |||||||| ||||||||||| ||||||| | |    
T  274 atagcatatgatattttttcaatttatttgtaacaactcaaaagcgttgtggtataagaaacgagaatggatttttatttgttatttttgtcaacatgca 175  T
Q  221 ttaaccgttccagtataat 239  Q
    ||||| ||||  |||||||    
T  174 ttaactgttctggtataat 156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 19463376 - 19463593
Alignment:
Q  21 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 120  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||       || || ||||||||||||||| ||||||||||||||||| |||||||    
T  19463376 cactacaacattttggctctacgacaacgcctaaatttcggaaggtaaaaaaaccctcctggtagagtcccatggacaacgattttctgattttgttgta 19463475  T
Q  121 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 220  Q
     |||||||| ||||||||||||||| ||  |||| |||| ||||||||||| |||||||||| | ||||||||||| ||||||||||||| ||||| |||    
T  19463476 gtagggtatgatattttttcaattt-tttataacgactcaaaagcgttgtgatataagaaacaagaacggatttttatttgttattttcggcaacatgta 19463574  T
Q  221 ttaaccgttccagtataat 239  Q
    ||||| |||| ||||||||    
T  19463575 ttaactgttctagtataat 19463593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 19561055 - 19561272
Alignment:
Q  21 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 120  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||       || || ||||||||||||||| ||||||||||||||||| |||||||    
T  19561055 cactacaacattttggctctacgacaacgcctaaatttcggaaggtaaaaaaaccctcctggtagagtcccatggacaacgattttctgattttgttgta 19561154  T
Q  121 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 220  Q
     |||||||| ||||||||||||||| ||  |||| |||| ||||||||||| |||||||||| | ||||||||||| ||||||||||||| ||||| |||    
T  19561155 gtagggtatgatattttttcaattt-tttataacgactcaaaagcgttgtgatataagaaacaagaacggatttttatttgttattttcggcaacatgta 19561253  T
Q  221 ttaaccgttccagtataat 239  Q
    ||||| |||| ||||||||    
T  19561254 ttaactgttctagtataat 19561272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 18394730 - 18394768
Alignment:
Q  21 cactacaacattttggccctacgacaacgcctaaatttt 59  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  18394730 cactacaacattttagccctacgacaacgcctaattttt 18394768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 9170 - 8951
Alignment:
Q  20 tcactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgt 119  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||         ||  ||||||||||||||| || ||||||||||||||||||| |    
T  9170 tcactacaacattttggctctacgacaacgcctaaattttggaaggtaaaaaaattgttctggtagagtcccatggactacgattttctgattctgtttt 9071  T
Q  120 aatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgt 219  Q
    | ||| |||| ||||||||| |||||||| |||||||||  |||||||||||||||||||||| | ||||||||||| |||||||||||  |||||| ||    
T  9070 agtagcgtatgatattttttaaatttatttgtaacaactaaaaagcgttgtggtataagaaacaagaacggatttttatttgttatttttttcaacatgt 8971  T
Q  220 attaaccgttccagtataat 239  Q
    |||||||||||  |||||||    
T  8970 attaaccgttctggtataat 8951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 17736014 - 17735975
Alignment:
Q  20 tcactacaacattttggccctacgacaacgcctaaatttt 59  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  17736014 tcactacaacattttggccctacgacaacgtctaattttt 17735975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 57715 - 57679
Alignment:
Q  23 ctacaacattttggccctacgacaacgcctaaatttt 59  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  57715 ctacaacattttggctctacgacaacgcctaattttt 57679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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