View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928_high_6 (Length: 572)

Name: NF4928_high_6
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928_high_6
NF4928_high_6
[»] chr1 (15 HSPs)
chr1 (10-356)||(5308654-5309001)
chr1 (10-356)||(23949710-23950056)
chr1 (45-357)||(42677238-42677551)
chr1 (15-354)||(23084754-23085092)
chr1 (10-357)||(50952404-50952754)
chr1 (14-357)||(34553712-34554055)
chr1 (17-205)||(22065193-22065381)
chr1 (20-196)||(2601205-2601380)
chr1 (304-357)||(23723127-23723180)
chr1 (16-72)||(6293939-6293995)
chr1 (16-76)||(16854872-16854932)
chr1 (286-357)||(22065041-22065111)
chr1 (16-67)||(28705914-28705965)
chr1 (148-209)||(8059849-8059910)
chr1 (152-208)||(16855004-16855060)
[»] chr3 (12 HSPs)
chr3 (10-357)||(54346747-54347095)
chr3 (10-330)||(27156033-27156354)
chr3 (39-314)||(43812988-43813263)
chr3 (17-357)||(46428575-46428915)
chr3 (17-199)||(42794505-42794687)
chr3 (17-209)||(54812236-54812428)
chr3 (17-180)||(43912269-43912432)
chr3 (14-104)||(51841288-51841377)
chr3 (16-72)||(37503012-37503068)
chr3 (286-357)||(54812088-54812158)
chr3 (320-357)||(52726490-52726527)
chr3 (16-72)||(43328829-43328885)
[»] chr5 (14 HSPs)
chr5 (10-357)||(18258978-18259326)
chr5 (10-353)||(22540222-22540566)
chr5 (10-331)||(34080606-34080925)
chr5 (17-209)||(4560304-4560496)
chr5 (17-209)||(18934072-18934264)
chr5 (17-207)||(18883400-18883590)
chr5 (259-333)||(13236721-13236796)
chr5 (16-72)||(14024858-14024914)
chr5 (152-208)||(32386547-32386603)
chr5 (14-133)||(32216808-32216927)
chr5 (427-460)||(37687861-37687894)
chr5 (152-208)||(239963-240019)
chr5 (152-208)||(14024994-14025050)
chr5 (16-72)||(32386411-32386467)
[»] chr4 (14 HSPs)
chr4 (10-357)||(34389644-34389992)
chr4 (10-353)||(36894255-36894603)
chr4 (17-207)||(47597580-47597770)
chr4 (134-209)||(4228307-4228382)
chr4 (17-104)||(43270883-43270970)
chr4 (16-72)||(1369357-1369413)
chr4 (16-72)||(28945496-28945552)
chr4 (286-357)||(44307718-44307789)
chr4 (324-357)||(28099577-28099610)
chr4 (152-208)||(44307583-44307639)
chr4 (129-174)||(11896076-11896121)
chr4 (152-208)||(1217218-1217274)
chr4 (152-208)||(1369493-1369549)
chr4 (152-208)||(28945360-28945416)
[»] chr2 (18 HSPs)
chr2 (10-357)||(13186900-13187247)
chr2 (96-357)||(40426006-40426268)
chr2 (10-250)||(7305027-7305267)
chr2 (43-313)||(37307177-37307448)
chr2 (69-357)||(6598990-6599280)
chr2 (10-331)||(40190284-40190606)
chr2 (393-555)||(33889569-33889726)
chr2 (17-209)||(17290048-17290240)
chr2 (286-357)||(7304957-7305027)
chr2 (16-72)||(42865840-42865896)
chr2 (124-226)||(26381237-26381339)
chr2 (16-72)||(11995863-11995919)
chr2 (16-72)||(24126543-24126599)
chr2 (129-172)||(6372668-6372711)
chr2 (286-357)||(24126257-24126328)
chr2 (14-91)||(26381377-26381454)
chr2 (427-460)||(33259776-33259809)
chr2 (152-208)||(42865976-42866032)
[»] chr8 (13 HSPs)
chr8 (10-355)||(1636010-1636356)
chr8 (10-357)||(26616565-26616911)
chr8 (10-357)||(456201-456547)
chr8 (17-209)||(44145724-44145915)
chr8 (17-207)||(38560608-38560798)
chr8 (286-357)||(45093635-45093706)
chr8 (16-72)||(33373121-33373177)
chr8 (152-208)||(42000334-42000390)
chr8 (16-72)||(45093364-45093420)
chr8 (287-356)||(33373393-33373461)
chr8 (287-331)||(9469177-9469221)
chr8 (286-342)||(42000469-42000525)
chr8 (152-208)||(45093500-45093556)
[»] chr7 (11 HSPs)
chr7 (10-357)||(8019584-8019931)
chr7 (10-353)||(48618946-48619290)
chr7 (19-353)||(29213572-29213907)
chr7 (17-209)||(24473467-24473659)
chr7 (134-209)||(24468636-24468711)
chr7 (16-72)||(46045830-46045886)
chr7 (152-208)||(5350053-5350109)
chr7 (152-208)||(8035770-8035826)
chr7 (16-72)||(38110802-38110858)
chr7 (17-72)||(8035635-8035690)
chr7 (152-208)||(38110666-38110722)
[»] chr6 (4 HSPs)
chr6 (17-104)||(1223055-1223142)
chr6 (286-357)||(1222820-1222890)
chr6 (158-209)||(1222968-1223019)
chr6 (427-460)||(4295695-4295728)
[»] scaffold0003 (1 HSPs)
scaffold0003 (17-104)||(355922-356010)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 5308654 - 5309001
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  5308654 attactctcatcttatagtggaaagtgaatcaaagattttgatcgacatgatttctgataatttcaagttcaatggaaatattcctgttttagtttaccg 5308753  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
     |||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  5308754 tatccggaatctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 5308853  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctagg-cttgcatgcctaggaatgttc 308  Q
    ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  5308854 acatatcattttaattttcttgtgttggagtctcctccttgtgaggtcaaaagaatcatttttgatgatttatccaggacttgcatgcctaggaatgttc 5308953  T
Q  309 gattaacttcttaattttgttttcttttgggctttgccctctcttgta 356  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  5308954 gattaacttcttaattttgtttacttttgggctttgccctctcttgta 5309001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 23949710 - 23950056
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23949710 attaatctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttaccg 23949809  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
     |||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  23949810 tatccggaagctgctgaagatgagttagaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 23949909  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcatgcctaggaatgttc 308  Q
    |||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| |  || ||||||||||||||||||||    
T  23949910 acagatcattttaattttattgtgttggagtctcctccttgtgaggtcaaaagaatcatttttgatgatttatccggggtttgcatgcctaggaatgttc 23950009  T
Q  309 gattaacttcttaattttgttttcttttgggctttgccctctcttgta 356  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||    
T  23950010 gattaacttcttaattttgttttcttttgggcttt-acctctcttgta 23950056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 45 - 357
Target Start/End: Original strand, 42677238 - 42677551
Alignment:
Q  45 attttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccagaagctgttgaagatgagttggaatgttc 144  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||| |||||||||||||||||||||    
T  42677238 attttgatcgacatgatttctgataatttcaagttcaatggaaatattcctgttttagtttaccgtatccggaagctgctgaagatgagttggaatgttc 42677337  T
Q  145 aactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttctacagatcattttaattttctagtgttggagtctcc 244  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  42677338 aactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttctacagatctttttaattttctagtgttggagtctcc 42677437  T
Q  245 tgcttgtgaggtcaaaagaatcatttttgatgatttatct-aggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggcttt 343  Q
    | |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42677438 tccttgtgaggtcaaaagaatcctttttgatgatttatctggggcttgcatgcctaggaatattcgattaacttcttaattttgttttcttttgggcttt 42677537  T
Q  344 gccctctcttgtac 357  Q
    ||||||||||||||    
T  42677538 gccctctcttgtac 42677551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 15 - 354
Target Start/End: Complemental strand, 23085092 - 23084754
Alignment:
Q  15 tctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatcc 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  23085092 tctcatcttatagtggaaagtgatttaaagattttgatcgacatgatttttgataatttcaagttcaatgggaatattcatgttttagtttaccggatcc 23084993  T
Q  115 agaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttctacaga 214  Q
     ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||  |    
T  23084992 ggaagctgctgaagatgagttggaatgttcaactcaaccatatttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttctacgta 23084893  T
Q  215 tcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctag-gcttgcatgcctaggaatgttcgatta 313  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||  | |||||||| ||||||||||||||||||    
T  23084892 tcattttaattttctagtgttggagtctcctccttgtgaggtcaaaataatcatttttgatgatttatccggagcttgcatacctaggaatgttcgatta 23084793  T
Q  314 acttcttaattttgttttcttttgggctttgccctctcttg 354  Q
    ||| ||||||||| |||  ||||||||||||||||||||||    
T  23084792 actccttaattttattt--ttttgggctttgccctctcttg 23084754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 357
Target Start/End: Complemental strand, 50952754 - 50952404
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  50952754 attactctaatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcatgttttagtttaccg 50952655  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||||||    
T  50952654 gatccggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaagaaaataggagtgctgattggctcgctaatataagcatttct 50952555  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttgtgaggt--caaaagaatcatttttgatgatttatct-aggcttgcatgcctaggaatgt 306  Q
    ||||||| ||||||||||||||||||||||| |||| |||||||  |   ||||| ||||||||| |||||||||||  ||||||||| |||||||||||    
T  50952554 acagatctttttaattttctagtgttggagtatcctccttgtgaaattaaaaaagtatcattttttatgatttatctggggcttgcatacctaggaatgt 50952455  T
Q  307 tcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  50952454 tcgattagcttcttaattttgttttcttttggactttgccctctcttgtac 50952404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 14 - 357
Target Start/End: Complemental strand, 34554055 - 34553712
Alignment:
Q  14 ttctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatc 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  | ||  ||||||||||| || |||||||| ||||||||    
T  34554055 ttctcatcttatagtggaaagtgattcaaagatttttatcgacatgatttctgataattttgaatttgatgggaatatttctattttagttcactggatc 34553956  T
Q  114 cagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttctacag 213  Q
    |||||| || |||||||||||| ||||||||||||||||||||||||| ||||||||||||  ||||||||||| ||||||||||| | ||||| ||||     
T  34553955 cagaagatgctgaagatgagttagaatgttcaactcaaccatacttggtgtgaaggaaatagaagtgctgattgactcgctaatttaaacatttatacat 34553856  T
Q  214 atcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctag-gcttgcatgcctaggaatgttcgatt 312  Q
    |||| ||||||||||| ||||||||||||||| || |||||||| ||| |||| |||||||||||||||| || ||||||||||||| ||||||||||||    
T  34553855 atcactttaattttcttgtgttggagtctcctcctagtgaggtccaaaaaatcctttttgatgatttatccagagcttgcatgcctatgaatgttcgatt 34553756  T
Q  313 aacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    | ||| ||| |||| |||| ||||||||||||| |||||||||||    
T  34553755 agcttgttagtttt-tttttttttgggctttgctctctcttgtac 34553712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 22065381 - 22065193
Alignment:
Q  17 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 116  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||||| || |||||||| ||||||||| | ||| |||||||| |  | |||  |    
T  22065381 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacaagttcaagtttaatgggaatgtgcctattttagttcatcgtatcagg 22065282  T
Q  117 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcat 205  Q
    | |||| |||  |||  |||| |||| ||| |||||||||||||||||||||||||||  ||||| |||||||| |||||||| |||||    
T  22065281 aggctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcat 22065193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 2601205 - 2601380
Alignment:
Q  20 tcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccagaag 119  Q
    ||||||||||||||||||||| ||||| || |||||||||| |||||| || |||||||| |||| ||||||  || |||||||| |||  |||  ||||    
T  2601205 tcttatagtggaaagtgattctaagatatt-atcgacatgaattctgacaaattcaagtttaatgagaatataactattttagttcactatatcatgaag 2601303  T
Q  120 ctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaa 196  Q
    ||| |||| |||| |||| |||| ||| |||| ||| ||||||   ||  |||||| |||||| ||||||| |||||    
T  2601304 ctgctgaacatgaattgggatgtgcaaatcaatcattcttggcacaaacaaaatataagtgcttattggcttgctaa 2601380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 23723127 - 23723180
Alignment:
Q  304 tgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    ||||| |||| |||||||||| ||||||||||| ||||||||||||||||||||    
T  23723127 tgttcaattagcttcttaattctgttttctttttggctttgccctctcttgtac 23723180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 6293939 - 6293995
Alignment:
Q  16 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 72  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||| |||| ||||    
T  6293939 ctcatcttatagtggagagtgactcaaagattttggtcgacatgattactgaaaatt 6293995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 16854872 - 16854932
Alignment:
Q  16 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaa 76  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||||||| || | ||||||||    
T  16854872 ctcatcttatagtggagagtgactcaaagatcttggtcgacatgattactaaaaatttcaa 16854932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 22065111 - 22065041
Alignment:
Q  286 ggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    ||||||||||||||||||||| || |||| ||| || |||  |||||| |||||||||||||||| ||||||    
T  22065111 ggcttgcatgcctaggaatgtccggttaatttcgtagtttc-ttttctcttgggctttgccctctattgtac 22065041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 28705914 - 28705965
Alignment:
Q  16 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctga 67  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||||||| ||||    
T  28705914 ctcatcttatagtggagagtgaatcaaagatcttggtcgacatgattactga 28705965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 8059910 - 8059849
Alignment:
Q  148 tcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    |||||||||| ||||| || |||||||  |||||||||||||| |||||||| ||| |||||    
T  8059910 tcaaccatacctggcgcgagggaaatagaagtgctgattggcttgctaattttagcttttct 8059849  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 16855004 - 16855060
Alignment:
Q  152 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 208  Q
    |||||||||||| ||||| || |  ||||| |||||||| |||||||||||||||||    
T  16855004 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 16855060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 54346747 - 54347095
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  54346747 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatggaaatattcctgttttagtttaccg 54346846  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
     |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  54346847 tatccggaagctgctgaagatgagttggaatgttcaactcacccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 54346946  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcatgcctaggaatgttc 308  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||| |  ||||| |||||||||||||||||    
T  54346947 acagatcattttaattttcttgtgctggagtctcctccttgtgaggtcaaaagaatcctttttgatgatttatccggggcttacatgcctaggaatgttc 54347046  T
Q  309 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  54347047 gattaacttcttaattttgtttttttttgggctttgccctctcttgtac 54347095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 27156354 - 27156033
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  27156354 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagtttaatgggaatattcctgttttagtttaccg 27156255  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27156254 gatccggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttcagcatttct 27156155  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctag-gcttgcatgcctaggaatgttc 308  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||  | ||||||||||||||||| ||||    
T  27156154 acagatcattttaattttctagtgttggagtctcctccttgtgaggtcaaaagaatcctttttaatgatttatccggagcttgcatgcctaggaacgttc 27156055  T
Q  309 gattaacttcttaattttgttt 330  Q
    |||||||||||||| |||||||    
T  27156054 gattaacttcttaagtttgttt 27156033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 39 - 314
Target Start/End: Original strand, 43812988 - 43813263
Alignment:
Q  39 tcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccagaagctgttgaagatgagttgga 138  Q
    ||||||||||||||||| |||||||||||||||||||| |  ||||| ||||||| ||||||||||||| ||||||| ||| ||||| |||||||||| |    
T  43812988 tcaaagattttgatcgatatgatttctgataatttcaaatgtaatggcaatattcatgttttagtttaccggatccaaaagttgttgcagatgagttgaa 43813087  T
Q  139 atgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttctacagatcattttaattttctagtgttgga 238  Q
    |||||||||||||||||| ||||||||||||||||  |||||||||||| |||||||| || |||||||||| |||||  ||||||||  |  ||||| |    
T  43813088 atgttcaactcaaccataattggcgtgaaggaaattggagtgctgattgactcgctaacttaagcatttctatagatc-gtttaatttgttgttgttgaa 43813186  T
Q  239 gtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatc--taggcttgcatgcctaggaatgttcgattaa 314  Q
    ||||||| || |||||||| ||  | |||||||||||||||||||  || | ||| ||||||||||||||||||||||    
T  43813187 gtctcctcctagtgaggtccaataactcatttttgatgatttatccgta-gtttgtatgcctaggaatgttcgattaa 43813263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 17 - 357
Target Start/End: Original strand, 46428575 - 46428915
Alignment:
Q  17 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 116  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||||| || |||||||| ||||||||||| ||| |||||||| |  | |||  |    
T  46428575 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacaagttcaagtttaatgggaatatgcctattttagttcatcgtatcagg 46428674  T
Q  117 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttctacagatc 216  Q
    |||||| |||  |||  |||| |||| ||| ||||||||||||||| |||||||||||  ||||| |||||||| |||||||| ||||||| |    |||    
T  46428675 aagctgctgagaatggattggcatgtgcaaatcaaccatacttggcatgaaggaaatagaagtgccgattggcttgctaattttagcatttatgtgaatc 46428774  T
Q  217 attttaattttctagtgttggagtctcctgcttgtgaggt-caaaagaatcatttttgatgatttatct-aggcttgcatgcctaggaatgttcgattaa 314  Q
    |||| |||||  |  | |||||| ||||| ||  |||| | | ||||  |||| ||||||||| | ||  |||||||||||||||||||||| || ||||    
T  46428775 atttgaatttgattattttggagactcctcctattgagcttcgaaagc-tcatgtttgatgatatttccgaggcttgcatgcctaggaatgtccgtttaa 46428873  T
Q  315 cttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
     ||| | | ||| |||||| |||||||||||||||| ||||||    
T  46428874 tttcgt-agtttcttttctcttgggctttgccctcttttgtac 46428915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 42794505 - 42794687
Alignment:
Q  17 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 116  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||| | || |||||||| ||||||||||| ||| |||||||| |  | |||  |    
T  42794505 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttaatgggaatatgcctattttagttcatcgtatcagg 42794604  T
Q  117 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaattt 199  Q
    |||||| |||  |||  |||| |||| ||| |||||||||||||||||||||||||||  ||||| |||||||| ||||||||    
T  42794605 aagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattt 42794687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 54812428 - 54812236
Alignment:
Q  17 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 116  Q
    ||||||||| ||||||||||| || ||||| ||||||||||||||||||||  | |||||||| ||||||||| | ||| |||||||| |  | |||  |    
T  54812428 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacgagttcaagtttaatgggaatgtgcctattttagttcatcgtatcagg 54812329  T
Q  117 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    |||||| |||  |||  || | |||| ||| |||||||||||||||||||||||||||  ||||| |||||||| |||||||| |||||||||    
T  54812328 aagctgctgagaatggattagcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 54812236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 43912432 - 43912269
Alignment:
Q  17 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 116  Q
    |||||||||||| |||||||| |||||||| |||||| ||||||||||||| || |||||||| |||||||||||  || |||||| | |  | |||  |    
T  43912432 tcatcttatagttgaaagtgactcaaagatattgatcaacatgatttctgagaagttcaagtttaatgggaatatctctattttagctcatcgtatcagg 43912333  T
Q  117 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtg 180  Q
    ||||||||||| |||  |||| | || ||| |||||||||  ||||| |||| |||||| ||||    
T  43912332 aagctgttgaaaatggattggcaagtgcaaatcaaccatatctggcgcgaagaaaatataagtg 43912269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 51841377 - 51841288
Alignment:
Q  14 ttctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtt 104  Q
    |||||||||||||||||| ||||| |||||| | ||||||||||| | |||||| |||||||| ||||| |||| ||| ||| ||||||||    
T  51841377 ttctcatcttatagtggagagtgactcaaagttattgatcgacat-acttctgacaatttcaatttcaaagggactatccctattttagtt 51841288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 37503012 - 37503068
Alignment:
Q  16 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 72  Q
    ||||| |||||||||| ||||| |||||||||||| ||||||||||| |||| ||||    
T  37503012 ctcattttatagtggagagtgactcaaagattttggtcgacatgattactgaaaatt 37503068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 54812158 - 54812088
Alignment:
Q  286 ggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    ||||||||||||||||||||| || |||| |||  | |||  ||||||||||||||||||||||| ||||||    
T  54812158 ggcttgcatgcctaggaatgtccggttaatttcgcagtttc-ttttcttttgggctttgccctctattgtac 54812088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 357
Target Start/End: Complemental strand, 52726527 - 52726490
Alignment:
Q  320 taattttgttttcttttgggctttgccctctcttgtac 357  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  52726527 taattttattttcttttaggctttgccctctcttgtac 52726490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 43328885 - 43328829
Alignment:
Q  16 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 72  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||| ||| |||| ||||    
T  43328885 ctcatcttatagtggagagtgactcaaagatcttggtcgacataattactgaaaatt 43328829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 265; Significance: 1e-147; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 10 - 357
Target Start/End: Complemental strand, 18259326 - 18258978
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| |    
T  18259326 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataattccaaattcaatgggaatattcttgttttagtttaccg 18259227  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    ||||| ||||||| ||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||     
T  18259226 gatccggaagctgctgaagataagttgaaatgttcaactcaaccatacctggcgcgaaggaaatatgagtgctgattggctcgctaatttaagcatttcg 18259127  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcatgcctaggaatgttc 308  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  18259126 acagatcattttaattttctagtgttggagtctcctccttgtgaggtcaaaagaatcatttttgatgatttatccggggcttgcatgcctaggaatgttc 18259027  T
Q  309 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||||||||    
T  18259026 gattagcttctaaattttattttcttttgggctttgccctctcttgtac 18258978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 353
Target Start/End: Original strand, 22540222 - 22540566
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  22540222 attactctcatcttatagttgaaagtgattcaaagattttgatcgacgtgatttctgataatttcaagttcgatggaaatattcctgttttagtttactg 22540321  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||| ||||||||||| |||||||||    
T  22540322 gatccggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtaaaggaaataggagtgttgattgactcgctaatttaagcatttct 22540421  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctag-gcttgcatgcctaggaatgttc 308  Q
    ||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||  | |||||||||| ||| |||||||    
T  22540422 acagatcatttaaattttctagtgttgaagtctcctccttgtgaggtcaaaagaatcatttttgatgatttatccggagcttgcatgcatagaaatgttc 22540521  T
Q  309 gattaacttcttaattttgttttcttttgggctttgccctctctt 353  Q
    ||||| |||||||||||||||||  ||||||||||||||||||||    
T  22540522 gattagcttcttaattttgtttttgtttgggctttgccctctctt 22540566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 10 - 331
Target Start/End: Complemental strand, 34080925 - 34080606
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| ||||||||||||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||||| |||||||| |||||||||| || |    
T  34080925 attactctcatcttatagtggaaagtgatttaaagattttgatggatatgatttctgataaattcaagttcaatgcgaatattcttgttttagttcaccg 34080826  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| | ||||| |    
T  34080825 gatccagaagctgctgaagatgggttggaatgttcaactcaaccatacttggcgtgaaggaaacatgagtgttgattggcttgctaatttaaacattttt 34080726  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctag-gcttgcatgcctaggaatgttc 308  Q
    ||| |||| ||||||||| |||||||||||||||   || |||||||| ||| |||| ||||||||||||||| | | |||||||||||||| |||||||    
T  34080725 acatatcactttaattttatagtgttggagtctc---ctagtgaggtccaaaaaatcctttttgatgatttatttggagcttgcatgcctagaaatgttc 34080629  T
Q  309 gattaacttcttaattttgtttt 331  Q
    |||||  || |||||||||||||    
T  34080628 gattagttttttaattttgtttt 34080606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 4560496 - 4560304
Alignment:
Q  17 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 116  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||||| || |||||||| ||||||||||| ||| |||||||| |  | |||  |    
T  4560496 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgaaaagttcaagtttaatgggaatatgcctattttagttcatcgtatcagg 4560397  T
Q  117 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    |||||| |||  |||  |||| |||| ||| |||||||||||||||||||||||||||  ||||||||||| || |||||||| |||||||||    
T  4560396 aagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgctgattgacttgctaattttagcatttct 4560304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 18934072 - 18934264
Alignment:
Q  17 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 116  Q
    ||||||||| |||||||||||  | ||||| ||||||||||||||||||||  | |||||||| ||||||||| | ||| |||||||| |  | |||  |    
T  18934072 tcatcttattgtggaaagtgacccgaagatattgatcgacatgatttctgacgagttcaagtttaatgggaatgtgcctattttagttcatcgtatcagg 18934171  T
Q  117 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    |||||| |||  |||  |||| |||| ||| |||||||||||||||||||||||||||  ||||| |||||||| |||||||| |||||||||    
T  18934172 aagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 18934264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 18883400 - 18883590
Alignment:
Q  17 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 116  Q
    ||||||||||||||||| ||| |||||||| ||||||||||||||||| || || || ||||| ||||||||||| ||| |||||||| | || |||  |    
T  18883400 tcatcttatagtggaaaatgactcaaagatattgatcgacatgatttcggacaagtttaagtttaatgggaatatccctattttagttcattgtatcagg 18883499  T
Q  117 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcattt 207  Q
    |||||  |||  |||  |||  |||| ||| |||||||||||||||| ||||||||||    ||| |||||||| |||||||| |||||||    
T  18883500 aagctactgagaatggattgacatgtgcaaatcaaccatacttggcgcgaaggaaatagatatgccgattggcttgctaattttagcattt 18883590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 259 - 333
Target Start/End: Original strand, 13236721 - 13236796
Alignment:
Q  259 aaagaatcatttttgatgatttatct-aggcttgcatgcctaggaatgttcgattaacttcttaattttgttttct 333  Q
    |||||||||||||||||| ||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  13236721 aaagaatcatttttgatgttttatccgaggcttgcatgcttaggaatgttcgattaacttcttaattttattttct 13236796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 14024858 - 14024914
Alignment:
Q  16 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 72  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||| |||| ||||    
T  14024858 ctcatcttatagtggagagtgactcaaagattttggtcgacatgattactgaaaatt 14024914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 32386547 - 32386603
Alignment:
Q  152 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 208  Q
    |||||||||||||||||| || || ||||||||||| || |||||||||||||||||    
T  32386547 ccatacttggcgtgaaggcaacataagtgctgattgacttgctaatttcagcatttc 32386603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 32216808 - 32216927
Alignment:
Q  14 ttctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatc 113  Q
    ||||||||| |||||||| ||  | ||||||||||||||| |||||||| |||  |||||| | ||||||| |||||| ||| ||||||| ||  | |||    
T  32216808 ttctcatctaatagtggagagcaactcaaagattttgatcaacatgattcctggcaatttccatttcaatgagaatatccctattttagtctagcgtatc 32216907  T
Q  114 cagaagctgttgaagatgag 133  Q
     |||||||  ||||||||||    
T  32216908 tagaagcttctgaagatgag 32216927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 460
Target Start/End: Complemental strand, 37687894 - 37687861
Alignment:
Q  427 aaaaaatctctagattcttctaacataaaatcta 460  Q
    ||||||||||||||||||| ||||||||||||||    
T  37687894 aaaaaatctctagattcttttaacataaaatcta 37687861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 240019 - 239963
Alignment:
Q  152 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 208  Q
    |||||||||||| ||||| || |  ||||| |||||||| |||||||||||||||||    
T  240019 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 239963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 14024994 - 14025050
Alignment:
Q  152 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 208  Q
    |||||||||||| ||||| || |  ||||| |||||||| |||||||||||||||||    
T  14024994 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 14025050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 32386411 - 32386467
Alignment:
Q  16 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 72  Q
    ||||||||||| |||| ||||| |||||||| ||| ||||||||||| |||| ||||    
T  32386411 ctcatcttatactggagagtgactcaaagatcttggtcgacatgattactgaaaatt 32386467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 10 - 357
Target Start/End: Complemental strand, 34389992 - 34389644
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  34389992 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcttgttttagtttaccg 34389893  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    |||||  |||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |    
T  34389892 gatccgaaagctgctgaagatgatttggaatgttcaactcaaccatacttagcgtgaaggaaataggagtgctgattggctcgctaatttaagcattttt 34389793  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcatgcctaggaatgttc 308  Q
    ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |  ||||| |||||||||||||||||    
T  34389792 acatatcattttaattttttagtgttggagtctcctccttgtgaggtcaaaagaatcctttttgatgatttatccggggcttacatgcctaggaatgttc 34389693  T
Q  309 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34389692 gattagcttcttaattttgttttcttttgggctttgccctctcttgtac 34389644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 353
Target Start/End: Complemental strand, 36894603 - 36894255
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |    
T  36894603 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctaataatttcaagttcaatgtgaatattcctgttttagtttaccg 36894504  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| |    
T  36894503 gatccggaagttgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgttgattggctcgctaatttaagcatttat 36894404  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctag-gcttgcatgcctaggaatgttc 308  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||  | ||||||||||||||||||||||    
T  36894403 acagatcattttaattttctagtgttggagtctcctccttgtgaggtcaaaagaatcctttttgatgatttatccggagcttgcatgcctaggaatgttc 36894304  T
Q  309 gattaacttcttaa-ttttgttttctttt---gggctttgccctctctt 353  Q
    ||||| |||||||| ||||||||| ||||   || ||||||||||||||    
T  36894303 gattagcttcttaatttttgtttttttttttgggtctttgccctctctt 36894255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 47597770 - 47597580
Alignment:
Q  17 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 116  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||||| || |||||||| ||||||||||| ||| |||||||| | || |||  |    
T  47597770 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacaagttcaagtttaatgggaatatgcctattttagttcattgtatcagg 47597671  T
Q  117 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcattt 207  Q
    |||||| |||  |||  |||| |||| ||| ||||||||||||||| | |||||||||  ||||| |||||||| |||||||| |||||||    
T  47597670 aagctgctgagaatggattggcatgtgcaaatcaaccatacttggcataaaggaaatagaagtgccgattggcttgctaattttagcattt 47597580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 4228307 - 4228382
Alignment:
Q  134 ttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    |||| |||| ||| |||||||||||||||||||||||||||  ||||| |||||||| |||||||| |||||||||    
T  4228307 ttggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 4228382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 43270970 - 43270883
Alignment:
Q  17 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtt 104  Q
    ||||||||||||  ||||||| || ||||| |||||||||||||||| ||| ||||||||| | ||||| ||||| ||| ||||||||    
T  43270970 tcatcttatagttaaaagtgactctaagatattgatcgacatgatttttgacaatttcaagcttaatggaaatatccctattttagtt 43270883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 1369357 - 1369413
Alignment:
Q  16 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 72  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||| |||| ||||    
T  1369357 ctcatcttatagtggagagtgactcaaagattttggtcgacatgattactgaaaatt 1369413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 28945552 - 28945496
Alignment:
Q  16 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 72  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||| |||| ||||    
T  28945552 ctcatcttatagtggagagtgactcaaagattttggtcgacatgattactgaaaatt 28945496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 357
Target Start/End: Original strand, 44307718 - 44307789
Alignment:
Q  286 ggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    |||||||||||||||||| ||||| |||| |||||| |||| ||||  |||| |||||||||||| ||||||    
T  44307718 ggcttgcatgcctaggaacgttcgtttaatttcttagttttctttttctttgtgctttgccctcttttgtac 44307789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 28099577 - 28099610
Alignment:
Q  324 tttgttttcttttgggctttgccctctcttgtac 357  Q
    ||||||||||||||||||||||||||||||||||    
T  28099577 tttgttttcttttgggctttgccctctcttgtac 28099610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 44307583 - 44307639
Alignment:
Q  152 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 208  Q
    |||||||||||||||||| || |  ||||| |||||||| |||||||||||||||||    
T  44307583 ccatacttggcgtgaaggcaacagaagtgcagattggcttgctaatttcagcatttc 44307639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 11896121 - 11896076
Alignment:
Q  129 atgagttggaatgttcaactcaaccatacttggcgtgaaggaaata 174  Q
    ||||||||| |||||||  |||||||||| ||||||||||||||||    
T  11896121 atgagttggcatgttcatatcaaccatacatggcgtgaaggaaata 11896076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 1217218 - 1217274
Alignment:
Q  152 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 208  Q
    |||||||||||| ||||| || |  ||||| |||||||| |||||||||||||||||    
T  1217218 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 1217274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 1369493 - 1369549
Alignment:
Q  152 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 208  Q
    |||||||||||| ||||| || |  ||||| |||||||| |||||||||||||||||    
T  1369493 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 1369549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 28945416 - 28945360
Alignment:
Q  152 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 208  Q
    |||||||||||| ||||| || |  ||||| |||||||| |||||||||||||||||    
T  28945416 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 28945360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 13186900 - 13187247
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  13186900 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatggaaatattcctgttttagtttaccg 13186999  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
     |||| ||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  13187000 tatccggaagctgctgaagacgagttggaatgttcaactcaatcatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 13187099  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgattta-tctaggcttgcatgcctaggaatgttc 308  Q
    ||| |||||||||||||| | ||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||  |||||||||||||||||||||||    
T  13187100 acatatcattttaattttattgtgttggagtctcctccttgtgaggtc-aaagaatcctttttgatgatttattcggggcttgcatgcctaggaatgttc 13187198  T
Q  309 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13187199 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 13187247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 96 - 357
Target Start/End: Complemental strand, 40426268 - 40426006
Alignment:
Q  96 gttttagtttactggatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgcta 195  Q
    |||||||||||| | |||| ||||||| ||||||||||||||||||||||||||| ||||| |||| |||||||||||| |||||||||||| |||||||    
T  40426268 gttttagtttaccgtatccggaagctgctgaagatgagttggaatgttcaactcacccatatttggtgtgaaggaaataggagtgctgattgactcgcta 40426169  T
Q  196 atttcagcatttctacagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcat 294  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||| |  |||||||||    
T  40426168 atttaagcatttctacagatcattttaattttcttgtgctggagtctcctccttgtgaggtcaaaagaatcttttttgatgatttatccggggcttgcat 40426069  T
Q  295 gcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40426068 gcctaggaatgttcgattaacttcttaatcttgttttcttttgggctttgccctctcttgtac 40426006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 7305267 - 7305027
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||| |    
T  7305267 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctaataatttcaagttcaatgagaatattcctgttttactttaccg 7305168  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    ||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  7305167 gatccggaacctgctgaagatgagttggaattttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctctctaatttaagcatttct 7305068  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttg 250  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  7305067 acagatcactttaattttctagtgttggagtctcctccttg 7305027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 43 - 313
Target Start/End: Complemental strand, 37307448 - 37307177
Alignment:
Q  43 agattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccagaagctgttgaagatgagttggaatgt 142  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||   ||| ||  |||||||||||| |||||    
T  37307448 agattttgatcgacatgatttctgataatttcaagttcaatgagaatattcctgttttagtttaccggatctgaaagttgccgaagatgagttgaaatgt 37307349  T
Q  143 tcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttctacagatcattttaattttctagtgttggagtct 242  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| || ||||||||||| ||||| |||||||| ||| |||||||||||    
T  37307348 tcaactcaaccatacttgacgtgaaggaaataggagtgctgattggctcgttaacttaagcatttctacggatcactttaatttactaatgttggagtct 37307249  T
Q  243 cctgcttgtgaggtcaaaagaatcatttttgatgatttatctagg-cttgcatgcctaggaatgttcgatta 313  Q
    ||| || | |||||| |||||||| |||| ||||||||||| ||| ||||||||||||||||| ||||||||    
T  37307248 ccttctagcgaggtccaaagaatccttttagatgatttatccaggacttgcatgcctaggaatcttcgatta 37307177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 69 - 357
Target Start/End: Original strand, 6598990 - 6599280
Alignment:
Q  69 aatttcaagttcaatgggaatattcctgttttagtttactggatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaag 168  Q
    |||||||||||||||||||||||||||||||||||| || |||||| |||| || ||||||||| ||||||||||||||||||||||| |||||||||||    
T  6598990 aatttcaagttcaatgggaatattcctgttttagttcaccggatccggaagttgctgaagatgaattggaatgttcaactcaaccataattggcgtgaag 6599089  T
Q  169 gaaatatgagtgctgattggctcgctaatttcagcatttctacagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcat 268  Q
    |||||| |||||||||||||||||||||||| |||||||||||| |||| ||| ||||| ||||||||||||||||| || |||||||| ||| |||  |    
T  6599090 gaaataagagtgctgattggctcgctaatttaagcatttctacatatcactttgattttttagtgttggagtctcctcctagtgaggtccaaaaaatact 6599189  T
Q  269 ttttgatgatttat-ctaggcttgcatgcctaggaatgttcgattaacttcttaattt-tgttttcttttgggctttgccctctcttgtac 357  Q
    |||||||||||||| |  |||||||||||||| ||||||||| ||| ||| ||| ||| | |||| |||||||||||||| ||| ||||||    
T  6599190 ttttgatgatttatccggggcttgcatgcctaagaatgttcgtttagctttttagtttgtttttttttttgggctttgccatcttttgtac 6599280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 10 - 331
Target Start/End: Complemental strand, 40190606 - 40190284
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||   |||||||| |||||||  ||      
T  40190606 attactctcatcttatagtggaaagtgattcaaagattttgatcgatatgatttctgataattttaagttcaatgaacatattcctattttagtccacca 40190507  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    |||||  || ||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||  ||||| ||| |||| || ||||||| |    
T  40190506 gatcccaaaactgctgaagatgagttggaatgttcaactcaaccatacttgacatgaaggaaataggagtgtagattgactcactaacttaagcatttat 40190407  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcatgcctaggaatgttc 308  Q
    || ||||| |||||||| ||||||||||| |||||| || ||||| ||  ||||||| ||||| ||||||||| | || |||||||| ||| ||||||||    
T  40190406 acggatcactttaatttactagtgttggaatctcctcctagtgagatccgaagaatcctttttaatgatttatccgagacttgcatgtctaagaatgttc 40190307  T
Q  309 gattaacttcttaattttgtttt 331  Q
    ||||| ||| |||||||||||||    
T  40190306 gattagctttttaattttgtttt 40190284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 393 - 555
Target Start/End: Complemental strand, 33889726 - 33889569
Alignment:
Q  393 gggaaataaacaaacaaaaatagcttcggactctaaaaaatctctagattcttctaacataaaatc----tannnnnnnnnaagtcgaaacaatcgcaat 488  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    ||         |||||||||||| ||||||    
T  33889726 gggaaataaacaaacaaaaataacttcggactctacaaaatctctagattcttctaacataaaatctatatatttttttttaagtcgaaacaagcgcaat 33889627  T
Q  489 catgacgtgagtcgtagggaagcaagtgagaaagttgttgaacattaaaaaccaatctcggcaaact 555  Q
    ||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33889626 ca---------tcgtagggaagcaagtgagaaagttgttgaacattaaaaaccaatctcggcaaact 33889569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 17290048 - 17290240
Alignment:
Q  17 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 116  Q
    ||||||||| ||||||||||| || ||||| ||||||||||||||||||||  | |||||||| ||||||||| | ||| |||||||| |  | |||  |    
T  17290048 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacgagttcaagtttaatgggaatgtgcctattttagttcatcgtatcagg 17290147  T
Q  117 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    |||||| |||  |||  |||| |||| ||| ||||||||| |||||||||||||||||  ||||| |||||||| |||||||| || ||||||    
T  17290148 aagctgctgagaatggattggcatgtgcaaatcaaccatatttggcgtgaaggaaatagaagtgccgattggcttgctaattttagtatttct 17290240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 7305027 - 7304957
Alignment:
Q  286 ggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    |||||||||||||| ||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  7305027 ggcttgcatgcctaagaatgttcgattagcttcttagttttgtttt-ttttgggctttgccctctcttgtac 7304957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 42865840 - 42865896
Alignment:
Q  16 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 72  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||| |||| ||||    
T  42865840 ctcatcttatagtggagagtgactcaaagattttggtcgacatgattactgaaaatt 42865896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 26381339 - 26381237
Alignment:
Q  124 tgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttctacagatcattttaa 223  Q
    |||||||||| ||| |||| ||| |||||||||||| | ||||||||||||  |||  ||||||||| |||||  |||||||| |||  |||||||| ||    
T  26381339 tgaagatgagatggcatgtgcaaatcaaccatacttcgtgtgaaggaaataaaagttttgattggcttgctaacatcagcattactaaggatcatttgaa 26381240  T
Q  224 ttt 226  Q
    |||    
T  26381239 ttt 26381237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 11995919 - 11995863
Alignment:
Q  16 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 72  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||||||| |||| ||||    
T  11995919 ctcatcttatagtggatagtgactcaaagatcttggtcgacatgattactgaaaatt 11995863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 24126599 - 24126543
Alignment:
Q  16 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 72  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||||||| |||| ||||    
T  24126599 ctcatcttatagtggagagtgactcaaagatcttggtcgacatgattactgaaaatt 24126543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 6372668 - 6372711
Alignment:
Q  129 atgagttggaatgttcaactcaaccatacttggcgtgaaggaaa 172  Q
    ||||||||| | |||||| |||||||||||||||||||||||||    
T  6372668 atgagttggcaagttcaaatcaaccatacttggcgtgaaggaaa 6372711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 24126328 - 24126257
Alignment:
Q  286 ggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    ||||||||||||||||||  | || |||| |||||| |||| ||||  ||||||||||||||||| ||||||    
T  24126328 ggcttgcatgcctaggaacttccgtttaatttcttagttttctttttctttgggctttgccctcttttgtac 24126257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 26381454 - 26381377
Alignment:
Q  14 ttctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatat 91  Q
    ||||||||| | |||||| || |  |||||||||||||| |||||||||||||| |||||  | ||||| ||||||||    
T  26381454 ttctcatctaaaagtggagagcggctcaaagattttgattgacatgatttctgacaattttcatttcaacgggaatat 26381377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 460
Target Start/End: Complemental strand, 33259809 - 33259776
Alignment:
Q  427 aaaaaatctctagattcttctaacataaaatcta 460  Q
    ||||||||||||||||||| ||||||||||||||    
T  33259809 aaaaaatctctagattcttttaacataaaatcta 33259776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 42865976 - 42866032
Alignment:
Q  152 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 208  Q
    |||||||||||| ||||| || |  ||||| |||||||| |||||||||||||||||    
T  42865976 ccatacttggcgggaaggcaacaaaagtgcagattggcttgctaatttcagcatttc 42866032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 355
Target Start/End: Original strand, 1636010 - 1636356
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1636010 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttaccg 1636109  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
     |||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| | |||||||    
T  1636110 tatccggaagctgctgaagatgagttggaatgttcaactcacccatacttagcgtgaaggaaataggagtgctgattggctcgctaatttaatcatttct 1636209  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctagg-cttgcatgcctaggaatgttc 308  Q
    |||||||||||||||||||| ||| ||||||||||| ||| |||| ||||||||||||||||||||||||||||| || ||||||||||||| |||||||    
T  1636210 acagatcattttaattttcttgtgctggagtctcctccttttgagatcaaaagaatcatttttgatgatttatctgggacttgcatgcctagaaatgttc 1636309  T
Q  309 gattaacttcttaattttgttttcttttgggctttgccctctcttgt 355  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  1636310 gattaactttttaattttgttttcttttgggctttgtcctctcttgt 1636356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 357
Target Start/End: Complemental strand, 26616911 - 26616565
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |    
T  26616911 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgtt--agtttaccg 26616814  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    ||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||    
T  26616813 gatctggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtactgattggctcactaatttaagcatttct 26616714  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcatgcctaggaatgttc 308  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| | | |||||||||||||| |||||||    
T  26616713 acagatcattttaattttctagtgttggagtctcctccttgtgatgtcaaaagaatcatttttgatgatttatccgaagcttgcatgcctagaaatgttc 26616614  T
Q  309 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    ||||| |||||||||||| |||| ||||||| |||||||||||||||||    
T  26616613 gattagcttcttaattttatttttttttgggttttgccctctcttgtac 26616565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 10 - 357
Target Start/End: Complemental strand, 456547 - 456201
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||| || || |    
T  456547 attactctcatcttatagtggaaagtgattcaaagagtttgattgatatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccg 456448  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||| |||||||||||||||| | |||||||    
T  456447 gatccggaagctactgaagatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattggctcgctaatttaaacatttct 456348  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctagg-cttgcatgcctaggaatgttc 308  Q
    ||  |||| ||| ||||| ||||| |||||| |||| ||  | ||||| |||||||| |||||||| |||||||  || |||||||||||| |||||||     
T  456347 acgtatcactttgattttttagtgctggagtttcctcctaataaggtccaaagaatcctttttgattatttatccgggacttgcatgcctatgaatgttt 456248  T
Q  309 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    ||||| ||| ||| ||| ||||  |||||||||||||| ||||||||||    
T  456247 gattatctttttagtttggttt--ttttgggctttgccttctcttgtac 456201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 44145724 - 44145915
Alignment:
Q  17 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 116  Q
    ||||||||| ||||||||||| || ||||| ||||||||||||||||||||  | |||||||| ||||||||| | ||| |||||||| |  | |||  |    
T  44145724 tcatcttat-gtggaaagtgactcgaagatattgatcgacatgatttctgacgagttcaagtttaatgggaatgtgcctattttagttcatcgtatcagg 44145822  T
Q  117 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    |||||| |||  |||  |||| |||| ||| |||||||||||||||||||||||||||  ||||||||||| || |||||||| |||||||||    
T  44145823 aagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgctgattgacttgctaattttagcatttct 44145915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 38560798 - 38560608
Alignment:
Q  17 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 116  Q
    ||||||||||||||||||||  || ||||| ||||||||| ||||||||||||  ||||| || ||||||||||| ||| |||||||| |  | ||| ||    
T  38560798 tcatcttatagtggaaagtggctcgaagatattgatcgacgtgatttctgataggttcaaatttaatgggaatatccctattttagttcatcgtatcaag 38560699  T
Q  117 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcattt 207  Q
    |||||| |||  |||  |||| |||| ||| |||||||||||||||  ||||||||||  ||||| |||||||| |||||||| |||||||    
T  38560698 aagctgctgagaatggattggcatgtgcaaatcaaccatacttggcacgaaggaaatagaagtgccgattggcttgctaattttagcattt 38560608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 357
Target Start/End: Original strand, 45093635 - 45093706
Alignment:
Q  286 ggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    |||||||||||||||||| || || |||| |||||| |||| ||||  ||||||||||||||||| ||||||    
T  45093635 ggcttgcatgcctaggaacgtccgtttaatttcttagttttctttttctttgggctttgccctcttttgtac 45093706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 33373121 - 33373177
Alignment:
Q  16 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 72  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||||||| |||| ||||    
T  33373121 ctcatcttatagtggagagtgactcaaagatcttggtcgacatgattactgaaaatt 33373177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 42000334 - 42000390
Alignment:
Q  152 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 208  Q
    |||||||||||||||||| || |  ||||| |||||||| |||||||||||||||||    
T  42000334 ccatacttggcgtgaaggcaacaaaagtgcagattggcttgctaatttcagcatttc 42000390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 45093364 - 45093420
Alignment:
Q  16 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 72  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||||||| |||| ||||    
T  45093364 ctcatcttatagtggatagtgactcaaagatcttggtcgacatgattactgaaaatt 45093420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 33373393 - 33373461
Alignment:
Q  287 gcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgta 356  Q
    ||||||||||||||||| || || |||| |||||| ||||  |||| ||||||||||||||||| |||||    
T  33373393 gcttgcatgcctaggaacgtccgtttaatttcttagtttt-ctttcctttgggctttgccctcttttgta 33373461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 9469177 - 9469221
Alignment:
Q  287 gcttgcatgcctaggaatgttcgattaacttcttaattttgtttt 331  Q
    |||||||||||||| |||||||| |||| |||||||||| |||||    
T  9469177 gcttgcatgcctagaaatgttcgtttaatttcttaatttggtttt 9469221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 42000469 - 42000525
Alignment:
Q  286 ggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctt 342  Q
    ||||||||||| |||||||||||| |||| |||||| |||| ||||  |||||||||    
T  42000469 ggcttgcatgcataggaatgttcgtttaatttcttagttttctttttctttgggctt 42000525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 45093500 - 45093556
Alignment:
Q  152 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 208  Q
    |||||||||||||||||| || |  ||||| |||||||| || ||||||||||||||    
T  45093500 ccatacttggcgtgaaggcaacagaagtgcagattggcttgcaaatttcagcatttc 45093556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 357
Target Start/End: Complemental strand, 8019931 - 8019584
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8019931 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttaccg 8019832  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
     |||| ||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || | ||||    
T  8019831 tatccggaatctgctgaagatgagttggaatgttcaactcacccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagtaattct 8019732  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctagg-cttgcatgcctaggaatgttc 308  Q
    |||||||| ||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||  || |||||||||||| ||||||||    
T  8019731 acagatca-tttaattttcttgtgctggagtctcctccttgtgaggtcaaaagaatcctttttgatgatttatccgggacttgcatgcctaagaatgttc 8019633  T
Q  309 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019632 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 8019584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 353
Target Start/End: Original strand, 48618946 - 48619290
Alignment:
Q  10 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 109  Q
    |||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48618946 attactcttatcttatagtggaaagtgattcaaagattttgattgacatgatttctgataatttcaagtttaatgggaatattcctgttttagtttactg 48619045  T
Q  110 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
     |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  48619046 tatccggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataagagtgctgattggctcgctaatttaagcatttct 48619145  T
Q  210 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcatgcctaggaatgttc 308  Q
    ||| |||||||||||||||||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||| |  ||||||||||| |||||||||||    
T  48619146 acaaatcattttaattttctagtgttggagtctcctccttctgagatcaaaagaatcctttttgatgatttatccggggcttgcatgcttaggaatgttc 48619245  T
Q  309 gattaacttcttaattttgttttcttttgggctttgccctctctt 353  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||    
T  48619246 gattagcttcttaattttgttttcttttgagctttgccctctctt 48619290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 29213907 - 29213572
Alignment:
Q  19 atcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccagaa 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| || || ||||||||||    
T  29213907 atcttgtagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatggaaatatttctgttttacttcaccggatccagaa 29213808  T
Q  119 gctgttgaagatgagttggaatgttcaactcaaccatacttggcgtg-aaggaaatatgagtgctgattggctcgctaatttcagcatttctacagatca 217  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||| |||||| ||||||||||| |||||||||||||||||    
T  29213807 gctattgaagatgagttggaatgttcaactcaaccatacttggcgtgaaagaaaaaaggagtgttgattgactcgctaatttaagcatttctacagatca 29213708  T
Q  218 ttttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcatgcctaggaatgttcgattaact 316  Q
     ||||||||||| ||||||||||||||| || |||||||| |||||||| ||||||||||||||| || |||||||||||||||||||||||||||| ||    
T  29213707 ctttaattttcttgtgttggagtctcctcctagtgaggtccaaagaatcttttttgatgatttatcctgggcttgcatgcctaggaatgttcgattagct 29213608  T
Q  317 tcttaattttgttttcttttgggctttgccctctctt 353  Q
    | ||| ||||||||| | ||| |||||||||||||||    
T  29213607 tgttagttttgtttt-tgttgagctttgccctctctt 29213572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 24473467 - 24473659
Alignment:
Q  17 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 116  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||||| || |||||||| ||||||||||| ||| |||||||| |  | |||  |    
T  24473467 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacaagttcaagtttaatgggaatatgcctattttagttcatcgtatcagg 24473566  T
Q  117 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    |||||| |||  |||  |||| |||| ||| |||||||||||||||||||||||||||  ||||| |||||||| |||||||| |||||||||    
T  24473567 aagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 24473659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 24468636 - 24468711
Alignment:
Q  134 ttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    |||| |||| ||| |||||||||||||||||||||||||||  ||||| |||||||| |||||||| |||||||||    
T  24468636 ttggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 24468711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 46045830 - 46045886
Alignment:
Q  16 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 72  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||| |||| ||||    
T  46045830 ctcatcttatagtggagagtgactcaaagattttggtcgacatgattactgaaaatt 46045886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 5350053 - 5350109
Alignment:
Q  152 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 208  Q
    |||||||||||||||||| || |  ||||| |||||||| |||||||||||||||||    
T  5350053 ccatacttggcgtgaaggcaacaaaagtgcagattggcttgctaatttcagcatttc 5350109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 8035770 - 8035826
Alignment:
Q  152 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 208  Q
    |||||||||||||||||| || |  ||||| |||||||| |||||||||||||||||    
T  8035770 ccatacttggcgtgaaggcaacagaagtgcagattggcttgctaatttcagcatttc 8035826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 38110858 - 38110802
Alignment:
Q  16 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 72  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||||||| |||| ||||    
T  38110858 ctcatcttatagtggagagtgactcaaagatattggtcgacatgattactgaaaatt 38110802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 8035635 - 8035690
Alignment:
Q  17 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 72  Q
    ||||||||||||||| ||||| |||||||| ||| ||||||||||| |||| ||||    
T  8035635 tcatcttatagtggagagtgactcaaagatcttggtcgacatgattactgaaaatt 8035690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 38110722 - 38110666
Alignment:
Q  152 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 208  Q
    |||||||||||| ||||| || |  ||||| |||||||| |||||||||||||||||    
T  38110722 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 38110666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 1223142 - 1223055
Alignment:
Q  17 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtt 104  Q
    ||||||||| ||||||||||| || ||||| ||||||||||||||||||||  | |||||||| ||||||||| | ||| ||||||||    
T  1223142 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacgagttcaagtttaatgggaatgtgcctattttagtt 1223055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 1222890 - 1222820
Alignment:
Q  286 ggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 357  Q
    ||||||||||||||||||||| || |||| ||| || |||  |||||| |||||||||||||||| ||||||    
T  1222890 ggcttgcatgcctaggaatgtccggttaatttcgtagtttc-ttttctcttgggctttgccctctattgtac 1222820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 1223019 - 1222968
Alignment:
Q  158 ttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 209  Q
    |||||||||||||||||  ||||| |||||||| |||||||| |||||||||    
T  1223019 ttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 1222968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 460
Target Start/End: Complemental strand, 4295728 - 4295695
Alignment:
Q  427 aaaaaatctctagattcttctaacataaaatcta 460  Q
    ||||||||||||||||||| ||||||||||||||    
T  4295728 aaaaaatctctagattcttttaacataaaatcta 4295695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 355922 - 356010
Alignment:
Q  17 tcatcttatagtggaaagtgattca-aagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtt 104  Q
    |||||||||||| |||| ||| ||  ||||| ||||||||||| |||| | | ||||||||||| ||| ||||||| ||| ||||||||    
T  355922 tcatcttatagtagaaaatgactcttaagatattgatcgacattatttgtcacaatttcaagtttaataggaatatccctattttagtt 356010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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