View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4928_high_7 (Length: 524)
Name: NF4928_high_7
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 13 - 506
Target Start/End: Complemental strand, 30496190 - 30495697
Alignment:
| Q |
13 |
aatatgtgaactagactgatgctattagctggatacttttattgtataacacttcccttaaaattcttgcaacttgaatgcactcaccttttccttttaa |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
30496190 |
aatatgtgaactagactggtgctattagctggatacttttattgtataacacttcccttaaaattcttgcaactttaatgcactcatcttttccttttaa |
30496091 |
T |
|
| Q |
113 |
gaacttcaagaacatgttgtgctgtgcaatatgcaatagcctgaacagtgaccattggattcacacctaaagctgtgggaaatacgcttgtatcggccag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30496090 |
gaacttcaagaacatgttgtgctgtgcaatatgcaatagcctgaacagtgaccattggattcacacctaaagctgtgggaaatacgcttgtatcggccag |
30495991 |
T |
|
| Q |
213 |
ataaagaccctctacttcccatgtttcccccgtttggttcacaactgattctttcggattagtacccatacggcagctccccatctgatgtgccgagcat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30495990 |
ataaagaccctctacttcccatgtttcccccgtttggttcacaaccgattctttcggattagtacccatacggcagctccccatctgatgtgccgagcat |
30495891 |
T |
|
| Q |
313 |
actggtgtcgataggtcagttaacggcattgagctttcttccttcacaaatttctcaaattcatgatagctcacttccttaacatttaagctccttccct |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30495890 |
actggtgtcgataggtcagttaacggcattgagctttcttccttcacaaatttctcaaattcatgatagctcacttccttaacatttaagctccttccct |
30495791 |
T |
|
| Q |
413 |
tattattatgtgtcccaatttcttcagctccagctgctgccagaattctcagcaccttctcaattcctttgtgtaaattctctttgtctacatt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30495790 |
tattattatgtgtcccaatttcttcagctccagctgctgccagaattctcagcaccttctcaattcctttgtgtaaattctctttgtctacatt |
30495697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 100 - 496
Target Start/End: Original strand, 10449309 - 10449705
Alignment:
| Q |
100 |
cttttccttttaagaacttcaagaacatgttgtgctgtgcaatatgcaatagcctgaacagtgaccattggattcacacctaaagctgtgggaaatacgc |
199 |
Q |
| |
|
||||||||||||||||| | ||||||| |||||| ||||| || ||||| | |||||||||| ||||||||||| || || ||||| ||||| || | |
|
|
| T |
10449309 |
cttttccttttaagaacctgaagaacagattgtgcagtgcagtaagcaattgattgaacagtgatcattggattcatgcccaatgctgtaggaaagacac |
10449408 |
T |
|
| Q |
200 |
ttgtatcggccagataaagaccctctacttcccatgtttcccccgtttggttcacaactgattctttcggattagtacccatacggcagctccccatctg |
299 |
Q |
| |
|
||| ||| |||| | ||||| |||| ||||||||||| ||||| || | ||||| || ||||| |||||||||| ||||| || || ||||||||| |
|
|
| T |
10449409 |
ttgcatctgccacaaaaagatcctccacttcccatgtctcccctgtctccttcaccaccgattccttcggattagatcccatccgacaagaccccatctg |
10449508 |
T |
|
| Q |
300 |
atgtgccgagcatactggtgtcgataggtcagttaacggcattgagctttcttccttcacaaatttctcaaattcatgatagctcacttccttaacattt |
399 |
Q |
| |
|
|||||||||||| | || || || ||||| ||||||| | |||| ||||| | || ||||||| |||||||||||| || ||| | | ||| |||||| |
|
|
| T |
10449509 |
atgtgccgagcacaaaggcgttgaaaggtctgttaacgaccttgaactttcctttttaacaaattgctcaaattcatggtaactcgcattctttacattt |
10449608 |
T |
|
| Q |
400 |
aagctccttcccttattattatgtgtcccaatttcttcagctccagctgctgccagaattctcagcaccttctcaattcctttgtgtaaattctctt |
496 |
Q |
| |
|
||| | ||||||| |||| ||| || |||||||||||||| || ||||| |||||||||||||| ||||| |||||||| || ||||||||||||| |
|
|
| T |
10449609 |
aaggtatttcccttgttatgatgagttccaatttcttcagcaccggctgcagccagaattctcagtaccttatcaattcccttctgtaaattctctt |
10449705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University