View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_low_1 (Length: 665)
Name: NF4928_low_1
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 616; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 16 - 651
Target Start/End: Complemental strand, 42744293 - 42743658
Alignment:
| Q |
16 |
catatcataccaagatttccttattcagtgattagtccagagcaacaactaaactctggttctgtccaaaatggtctttacagaataaagtttttcactc |
115 |
Q |
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| T |
42744293 |
catatcataccaagatttccttattcagtgattagtccagagcaacaactaaactctggttctgtccaaaatggtctttacagaacaaagtttttcactc |
42744194 |
T |
|
| Q |
116 |
aaatacttgatcacttcaattataaccctcagagttatcagaaatttcaacaaaggtatctcatcaatgatacttattggggtggtgccaaaaagaaagc |
215 |
Q |
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| T |
42744193 |
aaatacttgatcacttcaattataaccctcagagttatcagaaatttcaacaaaggtatctcatcaatgatacttattggggtggtgccaaaaagaaagc |
42744094 |
T |
|
| Q |
216 |
tccaatctttgtctatactggaaatgaagggaacatagagtggtttacacagaacactggatttatgtttgagcaagcaccttatttcaatgcccttttg |
315 |
Q |
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| T |
42744093 |
tccaatctttgtctatactggaaatgaagggaacatagagtggtttacacaaaacactggctttatgtttgagcaagcaccttatttcaatgcccttttg |
42743994 |
T |
|
| Q |
316 |
gtttttattgaggtaaactttattgtcttggattctctacctcttctgcattgtctttttgtctcatatcctagaaaacattttagtacatgtctggatt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42743993 |
gtttttattgaggtaaactttattgtcttggattctctacctcttctgcattgtctttttgtctcatatcctagacaacattttagtacatgtctggatt |
42743894 |
T |
|
| Q |
416 |
aacggtgaaattgacaacaaaatcgcagttgatttcgttaaactcaccatcaactcaaatatgtatttaatgatttgaaattaaatttgaattatatatg |
515 |
Q |
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| T |
42743893 |
aacgttgaaattgacaacaaaatcgcagttgatttcgttaaactcaccatcaactcaaatatgtatttaatgatttgaaattaaatttgaattatatatg |
42743794 |
T |
|
| Q |
516 |
tttatcttatgcattagaaattgaaatgcagcatagattctatggaaaatcaattccatttggaggcaagaagaaggttgcatatgcaaatagcagtaca |
615 |
Q |
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| T |
42743793 |
tttatcttatgcattagaaattgaaatgcagcatagattctatggaaaatcaattccatttggaggcaagaagaaggttgcatatgcaaatagcagtaca |
42743694 |
T |
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| Q |
616 |
cttggatatcttagttctgcacaagctttggctgat |
651 |
Q |
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| T |
42743693 |
cttggatatcttagttctgcacaagctttggctgat |
42743658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 82 - 329
Target Start/End: Complemental strand, 42748951 - 42748704
Alignment:
| Q |
82 |
caaaatggtctttacagaataaagtttttcactcaaatacttgatcacttcaattataaccctcagagttatcagaaatttcaacaaaggtatctcatca |
181 |
Q |
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|||||||| |||||||||| |||||||||||| |||||||||||||| ||||||||||| || ||||||||||| | |||||||||||||||||| |||| |
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| T |
42748951 |
caaaatggcctttacagaacaaagtttttcacccaaatacttgatcatttcaattataatccacagagttatcaaacatttcaacaaaggtatcttatca |
42748852 |
T |
|
| Q |
182 |
atgatacttattggggtggtgccaaaaagaaagctccaatctttgtctatactggaaatgaagggaacatagagtggtttacacagaacactggatttat |
281 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| | ||||| |||| |||||||| ||||| |
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| T |
42748851 |
atgatacctattggggtggtgccaaaaagaaagctccaatctttgtctacatgggaaatgaaggggacatacaatggttcgcacaaaacactggctttat |
42748752 |
T |
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| Q |
282 |
gtttgagcaagcaccttatttcaatgcccttttggtttttattgaggt |
329 |
Q |
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||| || |||||| |||||||||||| ||||||||||||||||||| |
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| T |
42748751 |
gttcgaaatagcaccctatttcaatgccattttggtttttattgaggt |
42748704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 651
Target Start/End: Complemental strand, 42748244 - 42748135
Alignment:
| Q |
542 |
tgcagcatagattctatggaaaatcaattccatttggaggcaa-gaagaaggttgcatatgcaaatagcagtacacttggatatcttagttctgcacaag |
640 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||| || || ||| |||||| || || |||||| |||||||||||| | ||||| |||| | |
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| T |
42748244 |
tgcagcatagatactatggaaaatcaataccatttggaggaaatgatgaa-gttgcaaataaaactagcagcacacttggatatatgagttccacacagg |
42748146 |
T |
|
| Q |
641 |
ctttggctgat |
651 |
Q |
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|||| |||||| |
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| T |
42748145 |
ctttagctgat |
42748135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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