View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_low_11 (Length: 454)
Name: NF4928_low_11
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_low_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Original strand, 28430924 - 28431363
Alignment:
| Q |
19 |
taattatcctattctcatagaaacggaccttcataatcgaccgaaatttgaactcaagttcaattaagatagaattaattccaatcactcgagttcggtt |
118 |
Q |
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| T |
28430924 |
taattatcctattctcatagaaacggaccttgataatcgaccgaaatttgaactcaagttcaattaagatagaattaactccaatcactcgagttcggtt |
28431023 |
T |
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| Q |
119 |
gttacatgattactagatccctctaaaaactaacgaaatnnnnnnnnn--ttacatgaaggtgacaatacatttattt--attagcttgaaaccaaacac |
214 |
Q |
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| T |
28431024 |
gttacatgattactagatccctctaaagactaacgaaataaataaaaaatttacatgaaggtgaccatacatttatttttattagcttgaaaccaaacac |
28431123 |
T |
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| Q |
215 |
atttataatgtctccttctttctatttaggctgcaacgggcaccttggatggtatcgttgacacagtttccgccgtccatcctttgttacctttgattgg |
314 |
Q |
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| T |
28431124 |
atttataatgtctccttctttttatttaggctgcaacgggcaccttggatggtatcattgacacagtttctgccgtccatcctttgttacctttgattgg |
28431223 |
T |
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| Q |
315 |
tcttctgaaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagcacatgcaaaat |
414 |
Q |
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| T |
28431224 |
tcttttgaaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagctcatgcaaaat |
28431323 |
T |
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| Q |
415 |
aatacannnnnnnnnataaagtacacttgtcattgagcct |
454 |
Q |
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| T |
28431324 |
aatacatttttttttataaagtacacttgtcattgagcct |
28431363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 241 - 393
Target Start/End: Complemental strand, 13453579 - 13453427
Alignment:
| Q |
241 |
taggctgcaacgggcaccttggatggtatcgttgacacagtttccgccgtccatcctttgttacctttgattggtcttctgaaatctcatggaaaacttg |
340 |
Q |
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| T |
13453579 |
taggctgcaacggctactttggatggtattatcgacacagtttcagcggatcatccgctattacctctgattggtttactcaagtctcatggaaagcttg |
13453480 |
T |
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| Q |
341 |
ttatggttggtgcacctgagaagcctctggagctaccagtatttcctttactt |
393 |
Q |
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| T |
13453479 |
taatggttggtgcacctgaaaagcctctagagcttcctgtttttcctttactt |
13453427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 403
Target Start/End: Original strand, 13385827 - 13385911
Alignment:
| Q |
319 |
ctgaaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagc |
403 |
Q |
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| T |
13385827 |
ctgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcctctggagatccccgtctttcctttaattttgggtaagc |
13385911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 403
Target Start/End: Original strand, 13389654 - 13389737
Alignment:
| Q |
320 |
tgaaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagc |
403 |
Q |
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| T |
13389654 |
tgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcctttggagatccccgtctttcctttaattttgggtaagc |
13389737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 404
Target Start/End: Original strand, 13411373 - 13411455
Alignment:
| Q |
322 |
aaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagca |
404 |
Q |
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| T |
13411373 |
aaatctcatggaaagcttgtattggttggtgccccagagaagcctcttgagttaccagcatggcctttactagtgggtaagca |
13411455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 404
Target Start/End: Complemental strand, 13378591 - 13378516
Alignment:
| Q |
329 |
atggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagca |
404 |
Q |
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| T |
13378591 |
atggtaaacttgttatggttggagctccagagaagcctttggagtttccagtattttctttgattgtgggtaagca |
13378516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 352
Target Start/End: Complemental strand, 13412808 - 13412715
Alignment:
| Q |
259 |
ttggatggtatcgttgacacagtttccgccgtccatcctttgttacctttgattggtcttctgaaatctcatggaaaacttgttatggttggtg |
352 |
Q |
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| T |
13412808 |
ttggatggtattattgacacagtttcagctgttcatcctctcttaccaatgattggtctcttgaagtctcatggaaagcttataatgcttggtg |
13412715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 13394054 - 13394106
Alignment:
| Q |
322 |
aaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagct |
374 |
Q |
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| T |
13394054 |
aaatatcacggaaaacttgtaatggtcggtgcacctgacaagcctccggagct |
13394106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 352
Target Start/End: Complemental strand, 13426013 - 13425953
Alignment:
| Q |
292 |
catcctttgttacctttgattggtcttctgaaatctcatggaaaacttgttatggttggtg |
352 |
Q |
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| T |
13426013 |
catcctatcttaccattgattggtttattgaaatctaatggaaaacttgtaatggttggtg |
13425953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 259 - 374
Target Start/End: Complemental strand, 47600976 - 47600861
Alignment:
| Q |
259 |
ttggatggtatcgttgacacagtttccgccgtccatcctttgttacctttgattggtcttctgaaatctcatggaaaacttgttatggttggtgcacctg |
358 |
Q |
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|||||||||||| ||||||||||||| || | |||||| | | |||| | ||||| | ||||| ||||||||||||||||| ||||||||||| || | |
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| T |
47600976 |
ttggatggtatcattgacacagtttcagctgaacatcctctctcacctctaattggattactgaagtctcatggaaaacttgtaatggttggtgctccag |
47600877 |
T |
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| Q |
359 |
agaagcctctggagct |
374 |
Q |
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| T |
47600876 |
cgaagcctctggagct |
47600861 |
T |
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