View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4928_low_15 (Length: 420)
Name: NF4928_low_15
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_low_15 |
 | |
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| [»] scaffold0070 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 192 - 412
Target Start/End: Complemental strand, 24894980 - 24894759
Alignment:
| Q |
192 |
ctcaattcaaccctagaaacaagaatttttt-cttagattgnnnnnnngtatgaagttgaaccaacccacagaaattgacacgcgaacttgagatcttaa |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24894980 |
ctcaattcaaccctagaaacaagaatttttttcttagattgtttttttgtatgaagttgaaccaacccacagaaattgacacgcgaacttgagatcttaa |
24894881 |
T |
|
| Q |
291 |
ataaagttaagagaagcacaccaccaaaattataaagttatatctttttaatcataaataaaaacctttatatatactttcatttcatctctctatcttc |
390 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24894880 |
ataaagttaagaaaagcacaccaccaaaattataaagttatatctttttaatcataaataaaaacctttatatatactttcatttcatctctctatcttc |
24894781 |
T |
|
| Q |
391 |
tcatacaacgttgcttcttctc |
412 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
24894780 |
tcatacaacgttgcttcttctc |
24894759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 192 - 403
Target Start/End: Original strand, 25326551 - 25326763
Alignment:
| Q |
192 |
ctcaattcaaccctagaaacaagaattttttcttagattgnnnnnnngtatgaagttgaaccaacccacagaaattgacacgc-gaacttgagatcttaa |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| |||||||||| ||||||| |||||||| |
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|
| T |
25326551 |
ctcaattcaaccctagaaacaagaattttttcttacattgtttttttttaagaagttgaaccaacccaccaaaattgacacattgaacttgtgatcttaa |
25326650 |
T |
|
| Q |
291 |
ataaagttaagagaagcacaccaccaaaattataaagttatatctttttaatcataaataaaaacctttatatatactttcatttcatctctctatcttc |
390 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25326651 |
ataaagttaagagaagcaaaccaccataattataaagttatatctttttaatcataaataaaaacctttatatatactttcatttcatctctctatcttc |
25326750 |
T |
|
| Q |
391 |
tcatacaacgttg |
403 |
Q |
| |
|
||||||||||||| |
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|
| T |
25326751 |
tcatacaacgttg |
25326763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 192 - 399
Target Start/End: Original strand, 25628809 - 25629018
Alignment:
| Q |
192 |
ctcaattcaaccctagaaacaagaatttttt-cttagattgnnnnnnngtatgaagttgaaccaacccacagaaattgacacgcga-acttgagatctta |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||| ||||||| ||||||||||| | ||||||||||||| |
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|
| T |
25628809 |
ctcaattcaaccctagaaacaagaatttttttcttagattgtttttttgtaagaagttgaactaacccactgaaattgacacattatacttgagatctta |
25628908 |
T |
|
| Q |
290 |
aataaagttaagagaagcacaccaccaaaattataaagttatatctttttaatcataaataaaaacctttatatatactttcatttcatctctctatctt |
389 |
Q |
| |
|
||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
25628909 |
aataaagttcagagaagcacaccattagaattataaagttatatctttttaatcataaataaaaacctttatatatactttcatttcatcttgatatctt |
25629008 |
T |
|
| Q |
390 |
ctcatacaac |
399 |
Q |
| |
|
|||||||||| |
|
|
| T |
25629009 |
ctcatacaac |
25629018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 24895175 - 24895065
Alignment:
| Q |
1 |
tataaaattctagtataatctagtaattaacatccaagtacatttgtatgaacaaaaaatctaaccatcctatcgaccaaaattaatttttctttatatt |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
24895175 |
tataaaattctagtataatctagtaattaacatccaagtacatttgtatgaacaaaaaatctaaccatcatatcgaccaaaattaatttttctttatatt |
24895076 |
T |
|
| Q |
101 |
ttaagcaacag |
111 |
Q |
| |
|
||||||||||| |
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|
| T |
24895075 |
ttaagcaacag |
24895065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 25326419 - 25326503
Alignment:
| Q |
28 |
taacatccaagtacattt-gtatgaacaaaaaatctaaccatcctatcgaccaaaattaatttttctttatattttaagcaacag |
111 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25326419 |
taacatccaagtacattttgtatgaacaaaaaatctaaccatcctatcgaccaaaattaatttttctttatattttaagcaacag |
25326503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 25628677 - 25628759
Alignment:
| Q |
28 |
taacatccaagtacatttgtatgaacaaaaaatctaaccatcctatcgaccaaaattaatttttctttatattttaagcaacag |
111 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
25628677 |
taacatccaagtacattt-tgtgaacaaaaaatctaaccatcctatcgaccaaaattaatttctctttatattttaagcaacag |
25628759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 192 - 411
Target Start/End: Complemental strand, 31301 - 31081
Alignment:
| Q |
192 |
ctcaattcaaccctagaaacaagaattttttcttagattgnnnnnnngtatgaagttgaaccaacccacagaaattgacacgcg-aacttgagatcttaa |
290 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||| || ||||||||||| ||||||||||||||| |
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|
| T |
31301 |
ctcaattcaaccatagaaacaagaattttttcttagattgtttttttttaagaagttgaaccaaccaaccgaaattgacacattcaacttgagatcttaa |
31202 |
T |
|
| Q |
291 |
ataaagttaagagaagcacaccaccaaaattataaagttatatctttttaatcataaataaaaacctttatatatactttcatttcatctctctatcttc |
390 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31201 |
ataaagttaagagaagcacaccaccaaacttataaagttgtatctttttaatcataaataaaaacctttatatatactttcatttcatctctctatcttc |
31102 |
T |
|
| Q |
391 |
tcatacaacgttgcttcttct |
411 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
31101 |
tcatacaacgttgctttttct |
31081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 31469 - 31383
Alignment:
| Q |
28 |
taacatccaagtacattt-gtatgaacaaaaaatctaaccatcctatcgaccaaaattaatttttct--ttatattttaagcaacag |
111 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
31469 |
taacatccaagtacattttgtatgaacaaaaaatctaaccatcctaacgaccaaaattaatttatcttattatattttaagcaacag |
31383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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