View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_low_16 (Length: 411)
Name: NF4928_low_16
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_low_16 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 13 - 411
Target Start/End: Original strand, 43164617 - 43165015
Alignment:
| Q |
13 |
aatatcaccaccatttgtaaagcatactggggaaaaatctggagcaggatcaaaagaaaaatcaaaagtcttggtccaagatgaatgcacggcgtattct |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43164617 |
aatatcaccaccatttgtaaagcatactggggaaaaatctggagcaggatcaaaagaaaaatcaaaagtcttggtccaagatgaatgcacagcgtattct |
43164716 |
T |
|
| Q |
113 |
tgcattacccatatcttaagtgtagacatctccatattccattcgctgataagcccgcgaagtaccaacaaatcataaaggttgggagaaaaatcactat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43164717 |
tgcattacccatatcttaagtgtagacatctccatattccatacgctgataagtccgcgaagtaccaacaaatcataaaggttgggagaaaaatcactat |
43164816 |
T |
|
| Q |
213 |
aaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43164817 |
aaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatg |
43164916 |
T |
|
| Q |
313 |
aatagaaccattcaagaacgacccgactctgggagcaccttcaggtctttcagtattccaataaggcaaatcagaatcaaactcaatttgttcccattc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43164917 |
aatagaaccattcaagaacgacccgactctgggagcaccttcaggtctttcagtattccaataaggcaaatcagaatcaaactcaatttgttcccattc |
43165015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 410
Target Start/End: Original strand, 41310939 - 41311336
Alignment:
| Q |
13 |
aatatcaccaccatttgtaaagcatactggggaaaaatctggagcaggatcaaaagaaaaatcaaaagtcttggtccaagatgaatgcacggcgtattct |
112 |
Q |
| |
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|||||| |||| |||||||||||||| ||||||||| || ||| | || | ||||||||||||||||||||| |||||||||||||| | ||||||||| |
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| T |
41310939 |
aatatcgccacaatttgtaaagcataatggggaaaactccggatcggggtgaaaagaaaaatcaaaagtcttagtccaagatgaatgtattgcgtattct |
41311038 |
T |
|
| Q |
113 |
tgcattacccatatcttaagtgtagacatctccatattccattcgctgataagcccgcgaagtaccaacaaatcataaaggttgggagaaaaatcactat |
212 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||||||||| | || ||||| | || || ||||| ||||||||||| | | ||| ||||||||| |
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| T |
41311039 |
tgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaatcactat |
41311138 |
T |
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| Q |
213 |
aaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatg |
312 |
Q |
| |
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||||| ||||||| |||||| ||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||| || || ||||||||||||||| |
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| T |
41311139 |
aaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaaccagccaatg |
41311238 |
T |
|
| Q |
313 |
aatagaaccattcaagaacgacccgactctgggagcaccttcaggtctttcagtattccaataaggcaaatcagaatcaaactcaatttgttcccatt |
410 |
Q |
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|||||||||||||||||||||||| ||||||||| |||| | || ||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41311239 |
aatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccatt |
41311336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 393
Target Start/End: Complemental strand, 30165975 - 30165608
Alignment:
| Q |
14 |
atatcaccaccatttgtaaagcatactggggaaaaatctggagcaggatcaaaagaaaaatcaaaagtcttggtccaagatgaatgcacggcgtattctt |
113 |
Q |
| |
|
|||||||| | |||||||||||||| ||| |||||||| ||| ||||| |||||||||||||| |||| | ||||||||||||||||| |||||||||| |
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| T |
30165975 |
atatcaccgcaatttgtaaagcatattggagaaaaatccagaggaggatgaaaagaaaaatcaagagtcgtagtccaagatgaatgcactgcgtattctt |
30165876 |
T |
|
| Q |
114 |
gcattacccatatcttaagtgtagacatctccatattccattcgctgataagcccgcgaagtaccaacaaatcataaaggttgggagaaaaatcactata |
213 |
Q |
| |
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|||| ||||||||||||| ||||||| |||||| ||||||| | |||||||| || ||| ||||||||||||||||| || ||| | | |
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| T |
30165875 |
gcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataaa--ttc----------cacgaga |
30165788 |
T |
|
| Q |
214 |
aaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatga |
313 |
Q |
| |
|
| |||||| ||||||||| ||||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
30165787 |
acaatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaaccagccaatga |
30165688 |
T |
|
| Q |
314 |
atagaaccattcaagaacgacccgactctgggagcaccttcaggtctttcagtattccaataaggcaaatcagaatcaaa |
393 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| ||||||||| | | ||| |||| ||||||||||| ||||||||| |
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| T |
30165687 |
atagaaccattgaagaacgacccaactctgggaccaccttcagagcatgcagggttcctataaggcaaatgagaatcaaa |
30165608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 204 - 319
Target Start/End: Original strand, 28180965 - 28181080
Alignment:
| Q |
204 |
aatcactataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaac |
303 |
Q |
| |
|
|||| ||||||||||||||||||||||| || |||||||||||| |||||||||||||| |||||||||||||| | |||| ||||||||||||||||| |
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| T |
28180965 |
aatccctataaaaatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaac |
28181064 |
T |
|
| Q |
304 |
cagccaatgaatagaa |
319 |
Q |
| |
|
|||||||||||||||| |
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| T |
28181065 |
cagccaatgaatagaa |
28181080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 214 - 344
Target Start/End: Original strand, 30131048 - 30131178
Alignment:
| Q |
214 |
aaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatga |
313 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| |||||||||||| | |||| ||||||||||| || ||||||||||||||||||||||||||| |
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|
| T |
30131048 |
aaaatcatttggaagagttatctctgacattgtcatttcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagccaatga |
30131147 |
T |
|
| Q |
314 |
atagaaccattcaagaacgacccgactctgg |
344 |
Q |
| |
|
|||| |||||||||||| |||||||||||| |
|
|
| T |
30131148 |
atagccccattcaagaacaacccgactctgg |
30131178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 210 - 401
Target Start/End: Original strand, 30125090 - 30125281
Alignment:
| Q |
210 |
tataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagcca |
309 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||||||| ||||||||||||| |||||| ||||||||| | | ||||||| ||||| ||||||||| |
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|
| T |
30125090 |
tataaaaatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatccttgttggtctcatgattatgaaccagcca |
30125189 |
T |
|
| Q |
310 |
atgaatagaaccattcaagaacgacccgactctgggagcaccttcaggtctttcagtattccaataaggcaaatcagaatcaaactcaattt |
401 |
Q |
| |
|
|||||||| |||||||||||| |||| |||||||| || | || | ||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
30125190 |
atgaatagtcccattcaagaacaacccaactctgggccatccgttagagcgagcagtattcctataaggcaaatgagaatcaaactcaattt |
30125281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 336
Target Start/End: Original strand, 30120047 - 30120170
Alignment:
| Q |
213 |
aaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatg |
312 |
Q |
| |
|
||||||| | ||| ||||| |||||||| |||||| |||||||||||||| ||||||||||||||| || | ||||||| ||||| ||||| |||||| |
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|
| T |
30120047 |
aaaaatcctttggcagagctatctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatg |
30120146 |
T |
|
| Q |
313 |
aatagaaccattcaagaacgaccc |
336 |
Q |
| |
|
||||| |||||||||||| |||| |
|
|
| T |
30120147 |
aatagccccattcaagaacaaccc |
30120170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 30119904 - 30119965
Alignment:
| Q |
67 |
agaaaaatcaaaagtcttggtccaagatgaatgcacggcgtattcttgcattacccatatct |
128 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
30119904 |
agaaaaaacaagagtcttaatccaagatgaatgcactgcatattcttgcattacccatatct |
30119965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 30130917 - 30130967
Alignment:
| Q |
86 |
gtccaagatgaatgcacggcgtattcttgcattacccatatcttaagtgta |
136 |
Q |
| |
|
||||||||||||||||| | |||||||||||| ||||||||||||| |||| |
|
|
| T |
30130917 |
gtccaagatgaatgcactgtgtattcttgcatcacccatatcttaactgta |
30130967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 216 - 345
Target Start/End: Complemental strand, 21426706 - 21426577
Alignment:
| Q |
216 |
aatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatgaat |
315 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| | |||||| |||||| ||||||||||||||| |
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|
| T |
21426706 |
aatcatctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaat |
21426607 |
T |
|
| Q |
316 |
agaaccattcaagaacgacccgactctggg |
345 |
Q |
| |
|
|| ||||| |||||||||||||||||||| |
|
|
| T |
21426606 |
agccccatttaagaacgacccgactctggg |
21426577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 21426839 - 21426789
Alignment:
| Q |
86 |
gtccaagatgaatgcacggcgtattcttgcattacccatatcttaagtgta |
136 |
Q |
| |
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|||||||||||||| || |||||||||||||| | ||||||||||| |||| |
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| T |
21426839 |
gtccaagatgaatggacagcgtattcttgcatcatccatatcttaattgta |
21426789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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