View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_low_18 (Length: 371)
Name: NF4928_low_18
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 6199349 - 6199693
Alignment:
| Q |
1 |
ttcctttcactttattttcatgtttcacttgagttttaccacaattacaagattatccgaaaacccactataactaactatataacaataacatgttggt |
100 |
Q |
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| T |
6199349 |
ttcctttcactttattttcatgtttcacttgagttttaccacaattacaagattatccgaaaacccactataactaactatataacaataacatgttggt |
6199448 |
T |
|
| Q |
101 |
tacaatatttaaaaataaaataaaattatattgcacaatggaggagattttctttattttaaaaatcggaataagcatattttnnnnnnnnnnnnnnnnn |
200 |
Q |
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| T |
6199449 |
tacaatatttaaaaataaaataaaattatattgcacaatggaggagattttctttattttaaaaatcggaataagcatattttataaaataaaaaatata |
6199548 |
T |
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| Q |
201 |
nnnnntcagctgaaatttaagttcggttccactagaaaatgtagcacctttgcgagtcaatccatatagagtcacttaaaaacatttattttgctgaaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6199549 |
aaaaatcagctgaaatttaagttcggttccactagaaaatgtagcacctttgcgagtcaatccatatagagtcacttaaaaacatttattttgctgaaat |
6199648 |
T |
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| Q |
301 |
taagtgcgaaactatgtgtgtgtatttgaagacaacatgtatatg |
345 |
Q |
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| T |
6199649 |
taagtgcgaaactatgtgtgtgtatttgaagacaacatgtatatg |
6199693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40154849 - 40154892
Alignment:
| Q |
1 |
ttcctttcactttattttcatgtttcacttgagttttaccacaa |
44 |
Q |
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| T |
40154849 |
ttcctttcactttgttttcatgtttcacttgaattttatcacaa |
40154892 |
T |
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