View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_low_2 (Length: 653)
Name: NF4928_low_2
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 272 - 647
Target Start/End: Complemental strand, 32685117 - 32684742
Alignment:
| Q |
272 |
ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgtaacccttttaaaatcagc |
371 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32685117 |
ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgtaacccttttaaaatcagc |
32685018 |
T |
|
| Q |
372 |
ttctttctgcttttcaagtttatccagggcagtccgcgctgcattcaacaactccaatccagctgctggtttacaggttaattaatattaaagaactcaa |
471 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
32685017 |
ttctttctgcttttcaattttatccagggcagtccgcgctgcattcaacaactccaatccaactgctggtttataggttaattaatattaaagaactcaa |
32684918 |
T |
|
| Q |
472 |
attcaacaactccaatccaactgctggtttcttaatttctagaatggcgtggcaaaatttttattcaaataatttaagcatttcttttcgaattgatgag |
571 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684917 |
attcaacaactccaatccaactgctggtttcttaatttctagaatggcgtggcaaaatttttattcaaataatttaagcatttcttttcgaattgatgag |
32684818 |
T |
|
| Q |
572 |
ttagatctatgaaagcggtatcatccgccaacactttagtagtctcagattcttatgattcgaggttgatgatgtc |
647 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32684817 |
ttagatctatgaaagcggtatcatccgccaacactttagtagtctcagattcttatgattcgaggtttgtgatgtc |
32684742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 295
Target Start/End: Complemental strand, 32685403 - 32685130
Alignment:
| Q |
17 |
aattagtgcagaataaatacaatagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttggaacttcccaagtgtcta |
116 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32685403 |
aattagtacagaataaatacaatagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttggcacttcccaagtgtcta |
32685304 |
T |
|
| Q |
117 |
tctaacactcacaacttaaggataaaacagaacatagttcagttttcctttcttaccctacacaactgcctaattttatttacagccttcaacatccttt |
216 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32685303 |
----aaactcacaacttaaggataaaacagaacatagttcagttttcctttcttactatacacaactgcctaattttatttacagccttcaacatccttt |
32685208 |
T |
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| Q |
217 |
atttgaatttcggcttttggatttctttcatcttaagcttcattctcctgctggtttggaacttcagctgccttagatg |
295 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32685207 |
atttgaacttcggcttttgga-atctttcatcttaagcttcattctcctgctggtttggaacttgagctgccttagatg |
32685130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 38 - 295
Target Start/End: Complemental strand, 32683672 - 32683420
Alignment:
| Q |
38 |
atagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttggaacttcccaagtgtctatctaacactcacaacttaagg |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |
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| T |
32683672 |
atagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttggcacttcccaagtgtcta----aaactcacaacttaagg |
32683577 |
T |
|
| Q |
138 |
ataaaacagaacatagttcagttttcctttcttaccctacacaactgcctaattttatttacagccttcaacatcctttatttgaatttcggcttttgga |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32683576 |
ataaaacagaacatagttcagttttcctttcttactctacacaactgcctaattttatttacagccttcaacatcctttatttgaacttcggcttttgga |
32683477 |
T |
|
| Q |
238 |
tttctttcatcttaagcttcattctcctgctggtttggaacttcagctgccttagatg |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
32683476 |
-atctttcatcttaagcttcattctcctgctggtttggaacttgagctgccttagatg |
32683420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 272 - 473
Target Start/End: Complemental strand, 32683407 - 32683211
Alignment:
| Q |
272 |
ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgtaacccttttaaaatcagc |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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|
| T |
32683407 |
ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgcagcccttttaaaatcagc |
32683308 |
T |
|
| Q |
372 |
ttctttctgcttttcaagtttatccagggcagtccgcgctgcattcaacaactccaatccagctgctggtttacaggttaattaatattaaagaactcaa |
471 |
Q |
| |
|
|||| |||||||||||| || |||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
32683307 |
ttctctctgcttttcaatttcatccagggcagtacgcgctgcattcaacaactccaa-----ctgctggtttataggttaattaatattaaagaactcaa |
32683213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 507 - 647
Target Start/End: Original strand, 32559538 - 32559678
Alignment:
| Q |
507 |
tttctagaatggcgtggcaaaatttttattcaaataatttaagcatttcttttcgaattgatgagttagatctatgaaagcggtatcatccgccaacact |
606 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32559538 |
tttctagaatggcgtggcaaaaattttattcaaataatttaagcatttcttttcgaattgatgagttagatctatgaaagcggtatcatccgctaacact |
32559637 |
T |
|
| Q |
607 |
ttagtagtctcagattcttatgattcgaggttgatgatgtc |
647 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||| |
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| T |
32559638 |
ttagtagtctcggattcttatgattcgaggtttgtgatgtc |
32559678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 234 - 473
Target Start/End: Original strand, 33010870 - 33011092
Alignment:
| Q |
234 |
tggatttctttcatcttaagcttcattctcctgctggtttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctc |
333 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
33010870 |
tggatgtctttcatcttaagcttcgtactcctgctggtttggaacttcagctgccttagatgtagctttttcatctatcttcttttgaac---------- |
33010959 |
T |
|
| Q |
334 |
agtttcttaatttcaactgtaacccttttaaaatcagcttctttctgcttttcaagtttatccagggcagtccgcgctgcattcaacaactccaatccag |
433 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| ||| ||||||||||||| || ||||| |||| || ||||||||||| ||||| ||| |
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|
| T |
33010960 |
--tttcttaatttcaacttcatcccttttaaaatcagattccttctgcttttcaatttcatccaaggcattcagcgctgcattcgccaacttcaa----- |
33011052 |
T |
|
| Q |
434 |
ctgctggtttacaggttaattaatattaaagaactcaaat |
473 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
33011053 |
ctgctggtttataggttaattaatattaaagaactcaaat |
33011092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 55 - 223
Target Start/End: Original strand, 33010662 - 33010824
Alignment:
| Q |
55 |
agtacataataaccagacacgcatagac-aagatttgcgagcttggaacttcccaagtgtctatctaacactcacaacttaaggataaaacagaacatag |
153 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||| ||||||| |||||||||| ||||||| |||||||| |||||||||| |||||||| |
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|
| T |
33010662 |
agtacataataaccaaacacgcatagaccaagatttgcaagcttggctcttcccaagtatctatct------cacaacttgaggataaaacggaacatag |
33010755 |
T |
|
| Q |
154 |
ttcagttttcctttcttaccctacacaactgcctaattttatttacagccttcaacatcctttatttgaa |
223 |
Q |
| |
|
|||| ||| | |||||||| | |||||||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
33010756 |
ttcaatttccttttcttactccacacaactgcttaattttatttaca-ccttcaacatcctttatttgaa |
33010824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 33011259 - 33011205
Alignment:
| Q |
231 |
ttttggatttctttcatcttaagcttcattctcctgctggtttggaacttcagct |
285 |
Q |
| |
|
||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
33011259 |
ttttggatttctttcttcttaatcttcgttctcctgctggtttggaacttcagct |
33011205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 28734811 - 28734759
Alignment:
| Q |
231 |
ttttggatttctttcatcttaagcttcattctcctgctggtttggaacttcag |
283 |
Q |
| |
|
|||||||| | ||||||| ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
28734811 |
ttttggatgtttttcatcataagcttcaatcttctgctggtttggaacttcag |
28734759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 473
Target Start/End: Complemental strand, 28711125 - 28711086
Alignment:
| Q |
434 |
ctgctggtttacaggttaattaatattaaagaactcaaat |
473 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||| |
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|
| T |
28711125 |
ctgcaggtttagaggttaattaatattaaagaactcaaat |
28711086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 28711423 - 28711376
Alignment:
| Q |
242 |
tttcatcttaagcttcattctcctgctggtttggaacttcagctgcct |
289 |
Q |
| |
|
|||||| |||||||||| ||||||| |||||||||||||||| ||||| |
|
|
| T |
28711423 |
tttcatgttaagcttcaatctcctgttggtttggaacttcaggtgcct |
28711376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 251 - 289
Target Start/End: Complemental strand, 28711300 - 28711262
Alignment:
| Q |
251 |
aagcttcattctcctgctggtttggaacttcagctgcct |
289 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
28711300 |
aagcttcaatctcctgctggtttggaacttcaggtgcct |
28711262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 34925139 - 34925199
Alignment:
| Q |
40 |
agttatataggaatcagtacataataaccagacacgcataga-caagatttgcgagcttgg |
99 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||| |||||| ||||||||| |||||||| |
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|
| T |
34925139 |
agttatataggaaatagtacagaataacaagacacacatagaccaagatttgagagcttgg |
34925199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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