View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4928_low_21 (Length: 350)
Name: NF4928_low_21
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 345
Target Start/End: Complemental strand, 45792382 - 45792057
Alignment:
| Q |
20 |
tattgcggatgtattcatatctaaattaatagaaagacaattttgcatccattgggaaccatggggacaatatacatgtttctgtagttctaaattagaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45792382 |
tattgcggatgtattcatatctaaattaatagaaagacaattttgcatccattgggaaccatggggacaatatacatgtttctgtagttctaaattagaa |
45792283 |
T |
|
| Q |
120 |
gtatcatagtcaaatgcctgcattgtgatctttgccaagattacacatatgtctttatgctttattcaataagtaacaagaaagcccatatatgattcag |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45792282 |
gtatcatagtcaaatgcctgcattgtgatctttgccaagattacacatatgtcttaatgcattattcaataagtaacaagaaagcccatatatgattcag |
45792183 |
T |
|
| Q |
220 |
gattgtatagatttctcagacttcaaagaccaaatagtccttgtattggatttatcttggtcagacaaatgtcaaataacaaaatttatgcgaaaaccaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45792182 |
gattgtatagatttctcagacttcaaagaccaaatagtccttgtattggatttatcttggtcagacaaatgtcaaataacaaaatttatgcgaaaaccaa |
45792083 |
T |
|
| Q |
320 |
aatactcaagcaatagtataatctac |
345 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
45792082 |
aatactcaagcaatagtataaactac |
45792057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University