View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928_low_22 (Length: 317)

Name: NF4928_low_22
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928_low_22
NF4928_low_22
[»] chr2 (1 HSPs)
chr2 (7-300)||(43060623-43060916)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 43060916 - 43060623
Alignment:
Q  7 tcgaagaatattaatcaaatcaatgattctgttgagagggaaaaacttacattgtgtgttacaaattctttgacgaatattcatcattgataatcaacga 106  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43060916 tcgacgaatattaatcaaatcaatgattacgttgagagggaaaaacttacattgtgtgttacaaattctttgacgaatattcatcactgataatcaacga 43060817  T
Q  107 tgagaattttgtacctttaacatggtaaaataaataaaagatgattgtagagttaacaagtgtatagtcaatttcttaaaagtataa-aaaatgtcatga 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||    
T  43060816 tgagaattttgtacctttaacatggtaaaataaataaaagatgattgtagagttaacaagtgtatagtcaattcctcaaaagtataaaaaaatgtcatga 43060717  T
Q  206 ttaattttaaaacnnnnnnnnnnnngcttccttaaccatgagacaccggttaacatgactcaaaaataaatacaaatatcaaaataatttgttgg 300  Q
    |||||||||||||            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43060716 ttaattttaaaac-tttttttttttgcttccttaaccatgagacaccggttaacatgattcaaaaataaatacaaatatcaaaataatttgttgg 43060623  T

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