View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4928_low_25 (Length: 289)
Name: NF4928_low_25
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 33 - 276
Target Start/End: Original strand, 36953036 - 36953277
Alignment:
| Q |
33 |
aaattatcaaaatactactaaatagttaaacctgtatgtttgaatcctttaaaa--atagtgcaagtgaatcgtttgaagctagtgtagacatatattgt |
130 |
Q |
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| T |
36953036 |
aaattctcaaagtactactaaatagttaaacctgaatgtttgaatcctttaaaacaatagtgcaagtgaatcatttgaaactagtgtacacataaattat |
36953135 |
T |
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| Q |
131 |
tgcagttctaagttgttggaaagtgggcaaagaatagtagagaaaagatcataaaatcattgctatgggtaaggattttgggttaaatgatttatctaag |
230 |
Q |
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| T |
36953136 |
tgcagttttaagttgttggaaagtgggaaaagaataatagag-aaagatcataaaatcattg--ttgggtaaggattttggg-tgaatgatttagctaag |
36953231 |
T |
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| Q |
231 |
tgaatcaaccagatctatctatgcatacataaacttctgtttcttc |
276 |
Q |
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| T |
36953232 |
tgaatcaactagatttatctatgcatgcataaacttttttttcttc |
36953277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 36947890 - 36947938
Alignment:
| Q |
53 |
aatagttaaacctgtatgtttgaatcctttaaaaatagtgcaagtgaat |
101 |
Q |
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| T |
36947890 |
aatagttaaacctgtatgtttgaatcctttaaaaatagtgcaagtgaat |
36947938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 36947443 - 36947481
Alignment:
| Q |
19 |
aagaggcgaggagaaaattatcaaaatactactaaatag |
57 |
Q |
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| T |
36947443 |
aagaggcgaggagaaaattatcaaaatactactaaatag |
36947481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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