View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4928_low_3 (Length: 647)
Name: NF4928_low_3
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_low_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 603; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 1 - 636
Target Start/End: Original strand, 36995246 - 36995883
Alignment:
| Q |
1 |
tggtgcaaaaaatttcttgcaaaatctgct--gtcaaagtaggatcaacagacaacatatatacacactagaaacgtgggtaacaatagtatgtcaaatg |
98 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
36995246 |
tggtgcaaaaaatttcttacaaaatctgctatgtcaaagtaggatcaacagacaacatatacacacactagaaacgtgggtaaaaatagtatgtcaaatg |
36995345 |
T |
|
| Q |
99 |
tgtgattagataaatttcgaagaaacttttcatgcaaatgctgtcaaaaataataagcattttccattttagaatcagcaatgttatggtacagctatta |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36995346 |
tgtgattagataaatttcgaagaaacttttcatgcaaatgctgtcaaaaataataagcattttccattttagaatcagcaatgttatggtacagctatta |
36995445 |
T |
|
| Q |
199 |
tcagtggagaaggcttgctacaccaattttcttttcaactttcaagcaaatatccttctaacatggttatctcaagtaactatcaacttttaacattaga |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36995446 |
tcagtggagaaggcttgctacaccaattttcttttcaactttcaagcaaatatccttctaacatggttatctcaagtaactatcaacttttaacattaga |
36995545 |
T |
|
| Q |
299 |
caagtgcttccaccctttaatgtgagaggccacgtagtcctcacttggaagcatgatattacagactttacatattattttggaattaatcatcctaata |
398 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36995546 |
caagtgcttccacccttttatgtgagaggccacgtagtcctcacttggaagcataatattacagactttacatattattttggaattaatcatcctaata |
36995645 |
T |
|
| Q |
399 |
ggttctgataggttcttttgcagggtagtttgcttctttgctttcaacacttccatagtttccctgtgtctccttcccctgaggtgggaaatcaaggttt |
498 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36995646 |
ggttctgataggttcttttgcagggtaggttgcttctttgctttcaacacttccatagtttccctgtgtctccttcccctgaggtgggaaatcaaggttt |
36995745 |
T |
|
| Q |
499 |
tctcacacgtaaccgttaccaaacataaagcacaagtccactctttctgcactgccttctgtgtagaactctgaggaacctctccacaagctgtgacact |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36995746 |
tctcacacgtaaccgttaccaaacataaagcacaagtccactctttctgcactgccttctgtgtagaactctgaggaacctctccacaagctgtgacact |
36995845 |
T |
|
| Q |
599 |
ctctgctgttcctttggtttctattatggctgatgatg |
636 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
36995846 |
ctctgctgttcctttggtttctattatggctgatgatg |
36995883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 153 - 636
Target Start/End: Original strand, 36979493 - 36979984
Alignment:
| Q |
153 |
aagcattttccattttagaatcagcaatgttatggtacagctatta---tcagtggagaaggcttgctacaccaattttcttttcaactttcaagcaaa- |
248 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||||||| || || ||||| ||||| |||||||| ||||||| |||||||||||||||||||| |
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|
| T |
36979493 |
aagcattttccatttaagaattggcaatgttttggtacacttaataatatcagtcaagaag-cttgctaccccaatttgcttttcaactttcaagcaaaa |
36979591 |
T |
|
| Q |
249 |
tatccttctaacatggttatctcaagtaactatcaacttttaacattagacaagtgcttccaccctttaatgtgagaggccacgtagtcctcacttggaa |
348 |
Q |
| |
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| ||| | ||||||||| || ||||||||||||| || ||||||||||||||||| || || | |||||| |||| || ||||||||||||| |
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| T |
36979592 |
tgtccctacgctatggttatc--aa--aactatcaactttgaattttagacaagtgcttccatccatttacgtgagatgccatatactcctcacttggaa |
36979687 |
T |
|
| Q |
349 |
gcatgatattacagactttacatattattttggaattaatcatcctaataggttctgataggttcttttgcagggtagtttgcttctttgctttcaa--- |
445 |
Q |
| |
|
|||| | |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||| | | || |||||||||||||||||| |
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|
| T |
36979688 |
gcataacattacagactttacatattaatttggaattaatcatcctaaagggttctgaagggttcttctgcggagcaggttgcttctttgctttcaaagc |
36979787 |
T |
|
| Q |
446 |
cacttccatagtttccctgtgtctccttcccctgaggtgggaaatcaaggttttctcacacgtaaccgttaccaaacataaagcacaagtccactctttc |
545 |
Q |
| |
|
|||| || | |||||| |||| || | | || ||| |||||||| ||| | || | ||||||||||||||||||||||||||||||||| |
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|
| T |
36979788 |
tgcttcacaagcagctctgtgtttcctcccattaatatgagaattcaaggttatctggctcgaagttgttaccaaacataaagcacaagtccactctttc |
36979887 |
T |
|
| Q |
546 |
tgcactgccttctgt------gtagaactctgaggaacctctccacaagctgtgacactctctgctgttcctttggtttctattatggctgatgatg |
636 |
Q |
| |
|
||||| |||||||| ||||||||| ||||||||||||||| ||||| | |||| | || ||||||||||||||| ||||| |||||||| |
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|
| T |
36979888 |
ggcacttccttctgtgtagcagtagaactcggaggaacctctccaccagctgggtcactgccatctattcctttggtttctactatggttgatgatg |
36979984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 421 - 636
Target Start/End: Original strand, 36980497 - 36980712
Alignment:
| Q |
421 |
gggtagtttgcttctttgctttcaacacttccatagtttccctgtgtctccttcccctgaggtgggaaatcaaggttttctcacacgtaaccgttaccaa |
520 |
Q |
| |
|
|||||| ||||||||||| | | || |||| |||| ||||||||| ||||||| | ||||||||||||||| |||||||| || |||||||| |
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|
| T |
36980497 |
gggtaggttgcttctttgatattaaagcttcactagtatccctgtgtttccttccattaaggtgggaaatcaagtctttctcacgcgatgttgttaccaa |
36980596 |
T |
|
| Q |
521 |
acataaagcacaagtccactctttctgcactgccttctgtgtagaactctgaggaacctctccacaagctgtgacactctctgctgttcctttggtttct |
620 |
Q |
| |
|
||||| |||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||||| ||| | ||||||||||||||||||||||||| |
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| T |
36980597 |
acatatagcacaagtccactctctctgcacttccttctgtgtagaactccgaggaacttctccaccagccctttcactctctgctgttcctttggtttcc |
36980696 |
T |
|
| Q |
621 |
attatggctgatgatg |
636 |
Q |
| |
|
| | || ||||||||| |
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|
| T |
36980697 |
actgtgactgatgatg |
36980712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 156 - 396
Target Start/End: Original strand, 37000120 - 37000363
Alignment:
| Q |
156 |
cattttccattttagaatcagcaatgttatggtacagctattatcagtggagaaggcttgctacaccaattttcttttcaactttcaagcaaa---tatc |
252 |
Q |
| |
|
|||||||||||| | ||||||||| ||| |||||||||| |||| |||| |||||||||||||||||||||| |||||||||||||||||||| |||| |
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|
| T |
37000120 |
cattttccatttgaaaatcagcaaagttttggtacagctgttataagtgaagaaggcttgctacaccaatttccttttcaactttcaagcaaaatgtatc |
37000219 |
T |
|
| Q |
253 |
cttctaacatggttatctcaagtaactatcaacttttaacattagacaagtgcttccaccctttaatgtgagaggccacgtagtcctcacttggaagcat |
352 |
Q |
| |
|
| | | | |||||||| || |||| |||| ||| || |||||||||||||| |||| | | ||||||||||| ||| || ||||||| || || |
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|
| T |
37000220 |
cctgtggtaaggttatctacagcaactttcaagtttgaattttagacaagtgctttttccctattaagtgagaggccatgtattcttcacttgaaatcaa |
37000319 |
T |
|
| Q |
353 |
gatattacagactttacatattattttggaattaatcatcctaa |
396 |
Q |
| |
|
| ||| |||||| ||||||||||||||||||||||| |||||| |
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|
| T |
37000320 |
aacattgcagactatacatattattttggaattaatcctcctaa |
37000363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 462 - 585
Target Start/End: Original strand, 36986225 - 36986354
Alignment:
| Q |
462 |
ctgtgtctccttcccctgaggtgggaaatcaaggttttctcacacgtaaccgttaccaaacataaagcacaagtccactctttctgcactgccttctgt- |
560 |
Q |
| |
|
|||||| || |||| || ||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36986225 |
ctgtgtttctttccactcaggtgggaattcaagattttctcactcgttgttgttaccaaacataaagcacaagtccactctttctgcacttccttctgtg |
36986324 |
T |
|
| Q |
561 |
-----gtagaactctgaggaacctctccac |
585 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
36986325 |
tagaagtagaactctgaggaacctctccac |
36986354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 513 - 636
Target Start/End: Original strand, 36996464 - 36996587
Alignment:
| Q |
513 |
gttaccaaacataaagcacaagtccactctttctgcactgccttctgtgtagaactctgaggaacctctccacaagctgtgacactctctgctgttcctt |
612 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | ||||||||||| || || |||| |||||||| |||| || |||||||||||||||||| |
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|
| T |
36996464 |
gttaccaaacataaagcacaagtccactttttctgcatttccttctgtgtacaatcctttggaaactctccaccagctctgtcactctctgctgttcctt |
36996563 |
T |
|
| Q |
613 |
tggtttctattatggctgatgatg |
636 |
Q |
| |
|
| ||||| | | || ||||||||| |
|
|
| T |
36996564 |
tagtttccactgtgactgatgatg |
36996587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 521 - 636
Target Start/End: Original strand, 37000473 - 37000591
Alignment:
| Q |
521 |
acataaagcacaagtccactctttctgcactgccttctgtgtag---aactctgaggaacctctccacaagctgtgacactctctgctgttcctttggtt |
617 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |||||||||||| |||||||||| | ||| |||| ||| ||| ||||||| ||||||||||| ||| |
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|
| T |
37000473 |
acataaagcacaagtccacttcttcggcacttccttctgtgtagcagaactctgaggtagctccccactagcagtgtcactctccgctgttccttttgtt |
37000572 |
T |
|
| Q |
618 |
tctattatggctgatgatg |
636 |
Q |
| |
|
||| ||||| |||||||| |
|
|
| T |
37000573 |
tcttctatggatgatgatg |
37000591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 483 - 636
Target Start/End: Original strand, 36984452 - 36984609
Alignment:
| Q |
483 |
tgggaaatcaaggttttctcacacgtaaccgttaccaaacataaagcacaagtccactctttctgcactgccttctg------tgtagaactctgaggaa |
576 |
Q |
| |
|
|||||| |||| ||||| ||||| | ||| |||||||||||||||||||| | |||||||||||||||| |||| || ||||||||||| |||| |
|
|
| T |
36984452 |
tgggaattcaatgttttttcacatggaactgttaccaaacataaagcacatgcccactctttctgcacttccttttgcgcaatagtagaactctgtggaa |
36984551 |
T |
|
| Q |
577 |
cctctccacaagctgtgacactctctgctgttcctttggtttctattatggctgatgatg |
636 |
Q |
| |
|
||||| ||| | ||||| || |||||||||||| |||||||| | | ||||||| |||| |
|
|
| T |
36984552 |
cctctacaccaactgtgtca--ctctgctgttccattggtttccactgtggctgacgatg |
36984609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 525 - 636
Target Start/End: Original strand, 36979011 - 36979122
Alignment:
| Q |
525 |
aaagcacaagtccactctttctgcactgccttctgtgtagaactctgaggaacctctccacaagctgtgacactctctgctgttcctttggtttctatta |
624 |
Q |
| |
|
||||| |||| |||||||| ||||| | ||||||| |||||||||| || |||| ||| |||| || |||||| |||||||||||| ||||||| | |
|
|
| T |
36979011 |
aaagcgcaaggccactcttcctgcagttccttctgcgtagaactcttgagatactcttcaccagctttgtcactctttgctgttcctttagtttctactg |
36979110 |
T |
|
| Q |
625 |
tggctgatgatg |
636 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36979111 |
tggctgatgatg |
36979122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 619
Target Start/End: Original strand, 36985178 - 36985234
Alignment:
| Q |
563 |
agaactctgaggaacctctccacaagctgtgacactctctgctgttcctttggtttc |
619 |
Q |
| |
|
||||||||||||||||||||||| ||| || | | |||| |||||||||||||||| |
|
|
| T |
36985178 |
agaactctgaggaacctctccaccagccctgtccccctctactgttcctttggtttc |
36985234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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