View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4928_low_31 (Length: 251)
Name: NF4928_low_31
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_low_31 |
 | |
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| [»] scaffold0070 (1 HSPs) |
| | |
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| [»] scaffold0466 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 24895398 - 24895154
Alignment:
| Q |
1 |
ctttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatctaa |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24895398 |
ctttcatttaaattgttattgtcaaatctaacatccctcaagaaagtcatgttgttaggcggtggaattttacatgcatatgtgtaacttttacatctaa |
24895299 |
T |
|
| Q |
101 |
gtatcagcgtaatgtccaagttcattattttggggctatttattttttataattaaaattttgattaggagatagtgaccaatgtaaggtcattgggaac |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24895298 |
gtatcaacgtaatgtccaagttcattattttggggctatttattttttataattaaaattttgattaggagatagtgaccaatgtaaggtcattgggaac |
24895199 |
T |
|
| Q |
201 |
caataattccattgaaaagttactataaaattctagtataatcta |
245 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24895198 |
caataatttcattgaaaagttactataaaattctagtataatcta |
24895154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 25628412 - 25628656
Alignment:
| Q |
1 |
ctttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatctaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| |
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|
| T |
25628412 |
ctttcatttaaattattatcgtcaaatctaacacccctcaagaaagtcatattgttaagcaatggagttttacatgcatatgtgtaacttttacatctaa |
25628511 |
T |
|
| Q |
101 |
gtatcagcgtaatgtccaagttcattattttggggctatttattttttataattaaaattttgattaggagatagtgaccaatgtaaggtcattgggaac |
200 |
Q |
| |
|
|||| | ||| |||||| || |||||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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|
| T |
25628512 |
gtattattgtactgtccagattaattattttagcgctgtttattttttataattaaaattttgattaggagatagagaccaatgtaaggtcattcagaac |
25628611 |
T |
|
| Q |
201 |
caataattccattgaaaagttactataaaattctagtataatcta |
245 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| |||||||||| |
|
|
| T |
25628612 |
caataatttcattgaaaagttattataaaattcatgtataatcta |
25628656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 25326259 - 25326362
Alignment:
| Q |
1 |
ctttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatctaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
25326259 |
ctttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtcgaattttacatgcatatgtgtaacttttaaatctaa |
25326358 |
T |
|
| Q |
101 |
gtat |
104 |
Q |
| |
|
|||| |
|
|
| T |
25326359 |
gtat |
25326362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 25370348 - 25370431
Alignment:
| Q |
5 |
catttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaac |
88 |
Q |
| |
|
|||||||||||||| || ||||| | || || |||| |||||||||||||||||| |||||||| || ||||| |||||||| |
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|
| T |
25370348 |
catttaaattgttaacgccaaatttgaccaccttcaaagaagtcatgttgttaagcgatggaatttcacctgcatgtgtgtaac |
25370431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 25395134 - 25395187
Alignment:
| Q |
35 |
ccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaac |
88 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| || ||||| |||||||| |
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|
| T |
25395134 |
ccctcaaataagtcatgttgttaagcgatggaatttcacctgcatgtgtgtaac |
25395187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 25326366 - 25326406
Alignment:
| Q |
183 |
tgtaaggtcattgggaaccaataattccattgaaaagttac |
223 |
Q |
| |
|
|||||| |||||| |||||||||||| |||||||||||||| |
|
|
| T |
25326366 |
tgtaagttcattgagaaccaataatttcattgaaaagttac |
25326406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 25806481 - 25806525
Alignment:
| Q |
44 |
aagtcatgttgttaagcggtggaattttacatgcatatgtgtaac |
88 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
25806481 |
aagtcaggttgttaagcggtggaatttcacctgcatgtgtgtaac |
25806525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 25811511 - 25811555
Alignment:
| Q |
44 |
aagtcatgttgttaagcggtggaattttacatgcatatgtgtaac |
88 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
25811511 |
aagtcaggttgttaagcggtggaatttcacctgcatgtgtgtaac |
25811555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 25824205 - 25824249
Alignment:
| Q |
44 |
aagtcatgttgttaagcggtggaattttacatgcatatgtgtaac |
88 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
25824205 |
aagtcaggttgttaagcggtggaatttcacctgcatgtgtgtaac |
25824249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 31738 - 31494
Alignment:
| Q |
1 |
ctttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31738 |
ctttcatttaaattgttatcgtcaaatctaacatccctaaaaaaagttatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatctaa |
31639 |
T |
|
| Q |
101 |
gtatcagcgtaatgtccaagttcattattttggggctatttattttttataattaaaattttgattaggagatagtgaccaatgtaaggtcattgggaac |
200 |
Q |
| |
|
|||| | ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| |
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|
| T |
31638 |
gtattattgtactgtccaagttaattattttggggctatttattttttataattaaaattttgattagaagatagagaccaatgtaaggtcattgagaac |
31539 |
T |
|
| Q |
201 |
caataattccattgaaaagttactataaaattctagtataatcta |
245 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
31538 |
caataatttcattgaaaagttattataaaattcaagtataatcta |
31494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 601 - 498
Alignment:
| Q |
1 |
ctttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
601 |
ctttcatttaaattgttatcgtcaaatctaacttccctcaagaaagtcatatcgttaagcggtggaatattacatgcatatgtgtaacttttacatctaa |
502 |
T |
|
| Q |
101 |
gtat |
104 |
Q |
| |
|
|||| |
|
|
| T |
501 |
gtat |
498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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