View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4928_low_39 (Length: 228)
Name: NF4928_low_39
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4928_low_39 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
| [»] scaffold0470 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 3118583 - 3118732
Alignment:
| Q |
79 |
atatatatagcaaccgtgggggatggtatgactctcataggtccccaaagagatctgccctgagtatcagttgagccagagcgcgtgcccatgctagttg |
178 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
3118583 |
atatatatagcaaccgtggcggatggtatgactctcataggtccccaaagagatctgccatgagtatcagttgagccagagcgcatgcccaggctagttg |
3118682 |
T |
|
| Q |
179 |
gatggtgaatccgcccctggtgtggatcaaaattcggaccaaatacataa |
228 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
3118683 |
ggtggtgaatccgcccctgatgtggatcaaaattctgaccaaatacataa |
3118732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 3118449 - 3118535
Alignment:
| Q |
1 |
cagagacatcacactgaaagcacgctcgccattccagtgcaactgagggaaacttctttattatttatgcctaatatgatatatata |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3118449 |
cagagacatcacactgaaagcacgctcgccattccagtgcaattgagggaaacttctttattatttatgcctaatatgatatatata |
3118535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 20965550 - 20965358
Alignment:
| Q |
1 |
cagagacatcacactgaaagcacgctcgccattccagtgcaactgagggaaacttctttattatttatgcctaatatgatatatatagcaaccgtggggg |
100 |
Q |
| |
|
||||||||| |||| |||| | |||||||||||||| | |||| ||| ||||| ||||| |||| |||| ||||||||||||||||||||| || || |
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|
| T |
20965550 |
cagagacattacacagaaaacgcgctcgccattccactacaacagagt-aaactaatttatcatttttgcccaatatgatatatatagcaaccttgagga |
20965452 |
T |
|
| Q |
101 |
atggtatgactctcataggtccccaaagagatctgccctgagtatcagttgagccagagcgcgtgcccatgctagttggatggtgaatccgccc |
194 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| | |||||||||| |||||||| | ||||||||| | ||||| ||| ||||||| |||||| |
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|
| T |
20965451 |
atggtatggctcccataggtccccaaagagatccgtcctgagtatcggttgagcccgggcgcgtgcctaggctagctgggtggtgaaaccgccc |
20965358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 43217345 - 43217538
Alignment:
| Q |
22 |
acgctcgccattccagtgcaactgagggaaacttctttattatttatgcctaatatg----------atatatatagcaaccgtgggggatggtatgact |
111 |
Q |
| |
|
||||||||||||||| | |||| |||||||||| || || ||||||||| |||||| ||||||||||||||| || ||||||||||| || |
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|
| T |
43217345 |
acgctcgccattccactacaaccaagggaaacttattaataatttatgcccaatatgatatatatatatatatatagcaaccttgagggatggtatggct |
43217444 |
T |
|
| Q |
112 |
ctcataggtccccaaagagatctgccctgagtatcagttgag-ccag---agcgcgtgcccatgctagttggatggtgaatccgcccctggtgt |
201 |
Q |
| |
|
| ||||||||||||||||| | | | |||||||| ||| || |||| |||||||||||| ||||| ||| ||| ||||||||||||||||| |
|
|
| T |
43217445 |
cctataggtccccaaagagacccgtcttgagtatcggttcagcccaggctagcgcgtgcccaggctagctgggtggcgaatccgcccctggtgt |
43217538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 197
Target Start/End: Complemental strand, 40702800 - 40702668
Alignment:
| Q |
66 |
tatgcctaatatgatatatatagcaaccgtgggggatggtatgactctcataggtccccaaagagatctgccc-tgagtatcagttgagccagagcgcgt |
164 |
Q |
| |
|
|||||||||||| ||||||||| || | ||||||| ||| |||||||||||||| || |||||| |||| ||||| | |||||||| | ||| || |
|
|
| T |
40702800 |
tatgcctaatatcgtatatataggaaatctaggggatgtcatggctctcataggtccctaaggagatccgcccctgagtgtgggttgagcccgggcgtgt |
40702701 |
T |
|
| Q |
165 |
gcccatgctagttggatggtgaatccgcccctg |
197 |
Q |
| |
|
||||| ||||| ||| |||| |||||||||||| |
|
|
| T |
40702700 |
gcccaggctagctgggtggtaaatccgcccctg |
40702668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 7680772 - 7680857
Alignment:
| Q |
114 |
cataggtccccaaagagatctg-ccctgagtatcagttgagccagagcgcgtgcccatgctagttggatggtgaatccgcccctgg |
198 |
Q |
| |
|
||||||||| |||||||||| | ||||||||| |||||||| | ||||||||||| ||||| ||| |||| |||||| |||||| |
|
|
| T |
7680772 |
cataggtcctcaaagagatccgtccctgagtaggggttgagcccgggcgcgtgcccaagctagctgggtggtaaatccgtccctgg |
7680857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 34000084 - 33999902
Alignment:
| Q |
15 |
tgaaagcacgctcgccattccagtgcaactgagggaaacttctttattatttatgcctaatatgatatatatagcaaccgtgggggatggtatgactctc |
114 |
Q |
| |
|
||||||||| ||| |||||||| | ||||| |||||||||| || |||||||||||| ||||| ||||||||||||||| ||||||||| ||||||| | |
|
|
| T |
34000084 |
tgaaagcacactcaccattccactccaact-agggaaacttattgattatttatgcccaatataatatatatagcaaccatgggggatgacatgactccc |
33999986 |
T |
|
| Q |
115 |
ataggtccccaaagagatctg-ccctgagtatcagttgagccagagcgcgtgcccatgctagttggatggtgaatccgcccctg |
197 |
Q |
| |
|
|||| | |||||||||||| | ||||||| || |||||||| | ||||||||||| ||||||||| |||| |||||||||||| |
|
|
| T |
33999985 |
atagattcccaaagagatccgcccctgagcatgggttgagcccgggcgcgtgcccaggctagttgggtggtaaatccgcccctg |
33999902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 6452021 - 6452201
Alignment:
| Q |
16 |
gaaagcacgctcgccattccagtgcaactgagggaaacttctttattatttatgcctaatatgatatatatagcaaccgtgggggatggtatgactctca |
115 |
Q |
| |
|
||||||| | || |||||||| |||||| ||| |||||| || |||||||||||| ||||| ||||||||| ||||| || || |||||||| ||| || |
|
|
| T |
6452021 |
gaaagcatgatcaccattccactgcaaccgagt-aaacttattgattatttatgcccaatataatatatataacaaccttgaggaatggtatggctccca |
6452119 |
T |
|
| Q |
116 |
taggtccccaaagagatctgccctgagtatcagttgagccagagcgcgtgcccatgctagttggatggtgaatccgcccctg |
197 |
Q |
| |
|
||| |||||||||||||| | |||||||||| |||||||| | ||||||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
6452120 |
tagatccccaaagagatccgtcctgagtatcggttgagcccgggcgcgtgcccaggctagctggatggtgaaaccgcccctg |
6452201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 31649531 - 31649721
Alignment:
| Q |
3 |
gagacatcacactgaaagcacgctcgccattccagtgcaactgagggaaacttctttattatttatgcctaatatgatatatatagcaaccgtgggggat |
102 |
Q |
| |
|
||||||| |||| ||| |||||||||||||||| | |||| ||| ||||| |||||||||| |||| ||||||||||||||||||| || || || |
|
|
| T |
31649531 |
gagacattacacataaaacacgctcgccattccactacaacagagt-aaactaatttattatttttgcccaatatgatatatatagcaagtttgaggaat |
31649629 |
T |
|
| Q |
103 |
ggtatgactctcataggtccccaaagagatctgccctgagtatcagttgagccagagcgcgtgcccatgctagttggatggtgaatccgccc |
194 |
Q |
| |
|
|||||| ||| ||||||| |||||||||||| | |||||||||| |||||||| | ||||||||||| ||||| ||| ||||||| |||||| |
|
|
| T |
31649630 |
ggtatggctcccataggttcccaaagagatccgtcctgagtatcggttgagcctgggcgcgtgcccaggctagctgggtggtgaaaccgccc |
31649721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 12447808 - 12447627
Alignment:
| Q |
15 |
tgaaagcacgctcgccattccagtgcaactgagggaaacttctttattatttatgcctaatatgatatatatagcaaccgtgggggatggtatgactctc |
114 |
Q |
| |
|
||||| |||||||||||||||| | ||| | | | |||||| || |||||||||||| ||||| ||||||||||||||| || || |||||||| ||| | |
|
|
| T |
12447808 |
tgaaaacacgctcgccattccactacaa-tcaagtaaacttattgattatttatgcccaatataatatatatagcaaccttgaggaatggtatggctccc |
12447710 |
T |
|
| Q |
115 |
ataggtccccaaagagatctgccctgagtatcagttgagccagagcgcgtgcccatgctagttggatggtgaatccgcccctg |
197 |
Q |
| |
|
|||| |||||||||||||| | |||||||||| |||||||| |||| |||||| | |||| ||| ||||||| ||||||||| |
|
|
| T |
12447709 |
atagatccccaaagagatccgtcctgagtatcggttgagcccgagcacgtgccaaggctaactgggtggtgaaaccgcccctg |
12447627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 197
Target Start/End: Original strand, 13760521 - 13760635
Alignment:
| Q |
83 |
atatagcaaccgtgggggatggtatgactctcataggtccccaaagagatctgccctgagtatcagttgagccagagcgcgtgcccatgctagttggatg |
182 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| | ||||||||| | ||||||||| ||||||| | ||||||||||| ||||||||| || |
|
|
| T |
13760521 |
atatagcaaccttgggggatggtatggctctcataggtctcaaaagagatccgtcctgagtattggttgagctcgggcgcgtgcccaggctagttgggtg |
13760620 |
T |
|
| Q |
183 |
gtgaatccgcccctg |
197 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
13760621 |
gtgaatccgcccctg |
13760635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 1705298 - 1705419
Alignment:
| Q |
66 |
tatgcctaatatgatatatatagcaaccgtgggggatggtatgactctcataggtccccaaagagatctgccctgagtatcagttgagccagagcgcgtg |
165 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| ||| |||||| || ||||| |||||||||||||| ||| ||||||| |||||||| | ||||||| |
|
|
| T |
1705298 |
tatgcccaatatgatatatatagcaaccttggagga-ggtatggcttccatagatccccaaagagatccgccttgagtatgggttgagcccgggcgcgtg |
1705396 |
T |
|
| Q |
166 |
cccatgctagttggatggtgaat |
188 |
Q |
| |
|
|||| ||||| ||| |||||||| |
|
|
| T |
1705397 |
cccaggctagctgggtggtgaat |
1705419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 197
Target Start/End: Complemental strand, 27395424 - 27395287
Alignment:
| Q |
60 |
attatttatgcctaatatgatatatatagcaaccgtgggggatggtatgactctcataggtccccaaagagatctgccctgagtatcagttgagccagag |
159 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| ||| |||||||||| ||| |||||||| ||||||||||| |||| |||||| |||||||| | | |
|
|
| T |
27395424 |
attatttatgcctgatatgatatatatagaaaccttggaggatggtatggctcccataggtctccaaagagatccgcccagagtattggttgagcccggg |
27395325 |
T |
|
| Q |
160 |
cgcgtgcccatgctagttggatggtgaatccgcccctg |
197 |
Q |
| |
|
||| |||||| ||||| || ||||||||||||||||| |
|
|
| T |
27395324 |
cgcatgcccaggctagcggggtggtgaatccgcccctg |
27395287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 155
Target Start/End: Complemental strand, 9683803 - 9683698
Alignment:
| Q |
50 |
aaacttctttattatttatgcctaatatgatatatatagcaaccgtgggggatggtatgactctcataggtccccaaagagatctgccctgagtatcagt |
149 |
Q |
| |
|
|||||| || |||||||||| |||||||||||||||||| |||| ||| |||||||||||||| ||| |||| ||||||||||| |||||| |||| || |
|
|
| T |
9683803 |
aaacttattgattatttatgtctaatatgatatatatagaaaccttggaggatggtatgactcccatgggtctccaaagagatccaccctgaatatcggt |
9683704 |
T |
|
| Q |
150 |
tgagcc |
155 |
Q |
| |
|
|||||| |
|
|
| T |
9683703 |
tgagcc |
9683698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 3650509 - 3650364
Alignment:
| Q |
50 |
aaacttctttattatttatgcctaatatgatatatatagcaaccgtgggggatggtatgactctcataggtccccaaagagatctgccctgagtatcagt |
149 |
Q |
| |
|
|||||| || |||||||||||| ||||| ||||||||||||| | || || |||||||| ||| | ||| |||||||||||||| | |||||||||| || |
|
|
| T |
3650509 |
aaactttttgattatttatgcccaatataatatatatagcaagcttgaggaatggtatggctcccttagatccccaaagagatccgtcctgagtatcggt |
3650410 |
T |
|
| Q |
150 |
tgagccagagcgcgtgcccatgctagttggatggtgaatccgcccc |
195 |
Q |
| |
|
|||||| | ||||||||||| ||||| ||| ||||||| ||||||| |
|
|
| T |
3650409 |
tgagcccgggcgcgtgcccaggctagctgggtggtgaaaccgcccc |
3650364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 12826775 - 12826655
Alignment:
| Q |
79 |
atatatatagcaaccgtgggggatggtatgactctcataggtccccaaagagatctgccctgagtatcagttgagccagagcgcgtgcccatgctagttg |
178 |
Q |
| |
|
||||||||||||||| || || |||||||| ||| |||||||||||||||||||| | |||||||||| |||||||| | ||||||||||| ||||| || |
|
|
| T |
12826775 |
atatatatagcaaccttgaggaatggtatggctcccataggtccccaaagagatccgtcctgagtatcggttgagcccgggcgcgtgcccaggctagctg |
12826676 |
T |
|
| Q |
179 |
gatggtgaatccgcccctggt |
199 |
Q |
| |
|
| ||||||| |||||| |||| |
|
|
| T |
12826675 |
ggtggtgaaaccgcccatggt |
12826655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 50633333 - 50633441
Alignment:
| Q |
79 |
atatatatagcaaccgtgggggatggtatgactctcataggtccccaaagagatctgccctgagtatcagttgagccagagcgcgtgcccatgctagttg |
178 |
Q |
| |
|
||||||||| ||| | || || |||||||| ||| ||||| |||||||||||||| | |||||||| | |||||||| | ||||||||||| ||||| || |
|
|
| T |
50633333 |
atatatataacaagcttgaggaatggtatggctcccatagatccccaaagagatccgtcctgagtaccggttgagcccgggcgcgtgcccaggctagctg |
50633432 |
T |
|
| Q |
179 |
gatggtgaa |
187 |
Q |
| |
|
| ||||||| |
|
|
| T |
50633433 |
ggtggtgaa |
50633441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 39840491 - 39840380
Alignment:
| Q |
79 |
atatatatagcaaccgtgggggatggtatgactctcataggtccccaaagagatctgccctgagtatcagttgagccagagcgcgtgcccatgctagttg |
178 |
Q |
| |
|
|||||||||| ||| | |||||||||||| ||| |||| ||| ||||||||||| ||||||||||| ||||| | | |||||||||| | ||| || |
|
|
| T |
39840491 |
atatatatagagaccttaggggatggtatggctcccatatgtctccaaagagatccaccctgagtatcgattgagtccggacgcgtgcccaggttagctg |
39840392 |
T |
|
| Q |
179 |
gatggtgaatcc |
190 |
Q |
| |
|
| |||||||||| |
|
|
| T |
39840391 |
ggtggtgaatcc |
39840380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 50633256 - 50633327
Alignment:
| Q |
15 |
tgaaagcacgctcgccattccagtgcaactgagggaaacttctttattatttatgcctaatatgatatatata |
87 |
Q |
| |
|
|||||||||||| ||||||||| | ||| ||| |||||| ||||||||||||||| ||||| ||||||||| |
|
|
| T |
50633256 |
tgaaagcacgcttgccattccacttaaaccgagt-aaacttttttattatttatgcccaatataatatatata |
50633327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 30732301 - 30732429
Alignment:
| Q |
66 |
tatgcctaatatgatatatatagcaaccgtgggggatggtatgactctcataggtccccaaagagatctgccctgagtatcagttgagccagagcgcgtg |
165 |
Q |
| |
|
|||||| ||| ||||||||||||||||| ||| |||||||||| || ||||| |||||||||||||| ||||||||||| |||||||| | |||||| |
|
|
| T |
30732301 |
tatgcccaatgtgatatatatagcaaccttggaggatggtatggcttccatagatccccaaagagatccgccctgagtatgggttgagcccggacgcgtg |
30732400 |
T |
|
| Q |
166 |
cccatgctagttggatggtgaatccgccc |
194 |
Q |
| |
|
|||| ||||| ||| |||||||||||||| |
|
|
| T |
30732401 |
cccaggctagctgggtggtgaatccgccc |
30732429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 16594335 - 16594220
Alignment:
| Q |
79 |
atatatatagcaaccgtgggggatggtatgactctcataggtccccaaagagatctgccctgagtatcagttgagccagagcgcgtgcccatgctagttg |
178 |
Q |
| |
|
||||||||||||||| || || |||||||| ||| |||||||||||||||||||| | ||| |||||| |||||||| | |||||||| || ||||| || |
|
|
| T |
16594335 |
atatatatagcaaccttgaggaatggtatggctcccataggtccccaaagagatccgtcctaagtatcggttgagcccgggcgcgtgctcaggctagctg |
16594236 |
T |
|
| Q |
179 |
gatggtgaatccgccc |
194 |
Q |
| |
|
| |||| || |||||| |
|
|
| T |
16594235 |
ggtggtaaaaccgccc |
16594220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 6623359 - 6623263
Alignment:
| Q |
101 |
atggtatgactctcataggtccccaaagagatctgccctgagtatcagttgagccagagcgcgtgcccatgctagttggatggtgaatccgcccctg |
197 |
Q |
| |
|
|||||||| ||| ||||| |||||||| ||||| | |||||||||| |||||||| | ||||||||||| | ||| ||| ||||||| ||||||||| |
|
|
| T |
6623359 |
atggtatggctcccatagatccccaaaaagatccgtcctgagtatcggttgagcccgggcgcgtgcccaggttagctgggtggtgaaaccgcccctg |
6623263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 23871440 - 23871508
Alignment:
| Q |
126 |
aagagatctgccctgagtatcagttgagccagagcgcgtgcccatgctagttggatggtgaatccgccc |
194 |
Q |
| |
|
|||||||| | |||||||||| ||| |||| | ||||||||||| ||||| ||| ||||||| |||||| |
|
|
| T |
23871440 |
aagagatccgtcctgagtatcggttaagcccgggcgcgtgcccaggctagctgggtggtgaaaccgccc |
23871508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 31162512 - 31162635
Alignment:
| Q |
5 |
gacatcacactgaaagcacgctcgccattccagtgcaactgagggaaacttctttattatttatgcctaatatgatatatatagcaaccgtgggggatgg |
104 |
Q |
| |
|
||||||||| | |||||||||||||| ||||| ||||| |||||||||| || || ||||||||| ||||||||||||||||||||| || ||||||| |
|
|
| T |
31162512 |
gacatcacattaaaagcacgctcgcctttccactgcaatcaagggaaacttattgataatttatgcccaatatgatatatatagcaaccttgagggatgg |
31162611 |
T |
|
| Q |
105 |
tatgactctcataggtccccaaag |
128 |
Q |
| |
|
|||| ||| |||||||||||||| |
|
|
| T |
31162612 |
tatggctcctataggtccccaaag |
31162635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 7588359 - 7588279
Alignment:
| Q |
6 |
acatcacactgaaagcacgctcgccattccagtgcaactgagggaaacttctttattatttatgcctaatatgatatatata |
87 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||||| || |||||| || |||||||||||||||||||||||||||| |
|
|
| T |
7588359 |
acatcacactgaaagtacgttcgccattccactgcaaccaagc-aaacttattgattatttatgcctaatatgatatatata |
7588279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 12783 - 12687
Alignment:
| Q |
101 |
atggtatgactctcataggtccccaaagagatctgccctgagtatcagttgagccagagcgcgtgcccatgctagttggatggtgaatccgcccctg |
197 |
Q |
| |
|
|||||||| ||| ||||| |||||||| ||||| | |||||||||| |||||||| | ||||||||||| | ||| ||| ||||||| ||||||||| |
|
|
| T |
12783 |
atggtatggctcccatagatccccaaaaagatccgtcctgagtatcggttgagcccgggcgcgtgcccaggttagctgggtggtgaaaccgcccctg |
12687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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