View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4928_low_5 (Length: 583)

Name: NF4928_low_5
Description: NF4928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4928_low_5
NF4928_low_5
[»] chr2 (12 HSPs)
chr2 (16-375)||(670539-670897)
chr2 (367-574)||(670147-670359)
chr2 (405-572)||(662917-663085)
chr2 (429-504)||(39190311-39190386)
chr2 (520-572)||(40113555-40113607)
chr2 (468-556)||(41826712-41826800)
chr2 (432-498)||(4840418-4840484)
chr2 (429-490)||(24138616-24138677)
chr2 (520-572)||(15144211-15144263)
chr2 (511-561)||(24138537-24138587)
chr2 (522-558)||(3950156-3950192)
chr2 (421-465)||(18341064-18341108)
[»] chr7 (4 HSPs)
chr7 (432-555)||(26450778-26450902)
chr7 (511-570)||(32517263-32517322)
chr7 (511-561)||(48853752-48853802)
chr7 (533-572)||(267703-267742)
[»] chr5 (5 HSPs)
chr5 (429-560)||(11339977-11340108)
chr5 (429-572)||(22729973-22730117)
chr5 (512-574)||(36950066-36950128)
chr5 (520-572)||(35941066-35941118)
chr5 (429-486)||(10491381-10491438)
[»] chr8 (8 HSPs)
chr8 (429-572)||(44626263-44626407)
chr8 (429-499)||(39517576-39517647)
chr8 (432-487)||(1262547-1262602)
chr8 (512-572)||(38144020-38144080)
chr8 (424-487)||(18325083-18325146)
chr8 (520-567)||(26005482-26005529)
chr8 (511-561)||(32038043-32038093)
chr8 (512-572)||(17497450-17497510)
[»] chr1 (3 HSPs)
chr1 (414-558)||(39574648-39574790)
chr1 (429-489)||(12017576-12017637)
chr1 (447-490)||(39581268-39581311)
[»] chr3 (11 HSPs)
chr3 (520-572)||(19240462-19240514)
chr3 (520-571)||(39032683-39032734)
chr3 (429-556)||(32285570-32285698)
chr3 (471-572)||(32280667-32280772)
chr3 (520-569)||(3469995-3470044)
chr3 (512-553)||(39351022-39351063)
chr3 (512-559)||(31112529-31112576)
chr3 (520-571)||(39039696-39039747)
chr3 (507-561)||(45677820-45677874)
chr3 (442-487)||(46612058-46612103)
chr3 (429-490)||(50158399-50158459)
[»] chr6 (9 HSPs)
chr6 (520-570)||(9972919-9972969)
chr6 (507-569)||(27101645-27101707)
chr6 (507-569)||(27143467-27143529)
chr6 (520-572)||(22958006-22958058)
chr6 (520-572)||(23830334-23830386)
chr6 (424-567)||(32932176-32932308)
chr6 (521-561)||(18338266-18338306)
chr6 (520-572)||(23848516-23848568)
chr6 (520-557)||(7553360-7553397)
[»] chr4 (7 HSPs)
chr4 (432-515)||(13393511-13393595)
chr4 (432-515)||(13396650-13396734)
chr4 (511-561)||(33366909-33366959)
chr4 (511-558)||(33361761-33361808)
chr4 (534-572)||(24423165-24423203)
chr4 (429-483)||(44160562-44160616)
chr4 (429-490)||(18890967-18891028)
[»] scaffold0502 (2 HSPs)
scaffold0502 (521-561)||(4390-4430)
scaffold0502 (521-561)||(9090-9130)


Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 375
Target Start/End: Complemental strand, 670897 - 670539
Alignment:
Q  16 acaactcaatgacaacattaacacat----catgtaatttacactgcttatacacggagtcgcatgtttcaatttggaagattacgatttcaaatctcat 111  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  670897 acaactcaatgacaacattaacacatacatcatgtaatttacactgcttatacacggagtcgcatgtttcaatttggaagattacgatttcaaatctcat 670798  T
Q  112 cgaggcatggtatggcatggcatgaggtgactataagcataaacatgaaaagacctattctcatccataccatactatagtgagtgagtattaatgtgac 211  Q
    || |||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  670797 cgtggcatgg-----catggcatgaggtgactataagcataaacatgaaaagacctattctcatccataccatactatagtgagtgagtattaatgtgac 670703  T
Q  212 acactgcccaaattccattagacccttatccaacgctaactcattctttttgtatcctgtgcatttagtggcgaataataatattcttcgacatgcgtac 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||    
T  670702 acactgcccaaattccattagacccttatccaacgctaactcattctttttgtatcctgtgcatttagtggcgaataataatattattctcgatgcgtac 670603  T
Q  312 ttactttttgtacccnnnnnnngttacctaataatattcatgccatattttctctttaacaaaa 375  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  670602 ttactttttgtacccaaaaaaagttacctaataatattcatgccatattttctctttaacaaaa 670539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 367 - 574
Target Start/End: Complemental strand, 670359 - 670147
Alignment:
Q  367 ttaacaaaatagtaaaaccaggggagtctctcataaaa-ttttctatctta---gccctaaattagtagatacaagttatagcatatcatcgataataaa 462  Q
    |||||||||||||||||| |||||||||||| |||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  670359 ttaacaaaatagtaaaactaggggagtctctgataaaagttttctatcttattagccctaaattagtagatacaagttatagcatatcatcgataataaa 670260  T
Q  463 gaaaaaa-taagaaattgtgtacctttaaattaggttggtgaaacataattgtcagacggatgagagggacgactaccctcattccatttagcaccagaa 561  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  670259 gaaaaaaataagaaattgtgtacctttaaattaggttggtgaaacataattgtcagacggatgagagggatgactaccctcattccgtttagcaccagaa 670160  T
Q  562 tattcagaataat 574  Q
    |||||||||||||    
T  670159 tattcagaataat 670147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 405 - 572
Target Start/End: Complemental strand, 663085 - 662917
Alignment:
Q  405 ttttctatcttagccctaaattagtagatacaagttatagcatatcatcgataataaagaaaaaa-taagaaattgtgtacctttaaattaggttggtga 503  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||    
T  663085 ttttctatcttagccctagattagtagatacaagttatagcatatcatcgattataaagaaaaaactaagaaattgtgtacctttgaattaggttggtga 662986  T
Q  504 aacataattgtcagacggatgagagggacgactaccctcattccatttagcaccagaatattcagaata 572  Q
    | ||||||| ||| | ||||||||  || || |||||||||||| |||||||||||| |||||||||||    
T  662985 agcataattatcataaggatgagattgatgattaccctcattccgtttagcaccagactattcagaata 662917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 429 - 504
Target Start/End: Complemental strand, 39190386 - 39190311
Alignment:
Q  429 tagatacaagttatagcatatcatcgataataaagaaaaaataagaaattgtgtacctttaaattaggttggtgaa 504  Q
    ||||||||| ||||||||||||||| |||||||||||  ||  ||||||||||||||||| |||||||||| ||||    
T  39190386 tagatacaaattatagcatatcatcaataataaagaaggaaggagaaattgtgtacctttgaattaggttgatgaa 39190311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 520 - 572
Target Start/End: Complemental strand, 40113607 - 40113555
Alignment:
Q  520 ggatgagagggacgactaccctcattccatttagcaccagaatattcagaata 572  Q
    |||||||||||| ||||||||||||||| |||||||||||||| |||||||||    
T  40113607 ggatgagagggatgactaccctcattccgtttagcaccagaatgttcagaata 40113555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 468 - 556
Target Start/End: Complemental strand, 41826800 - 41826712
Alignment:
Q  468 aataagaaattgtgtacctttaaattaggttggtgaaacataattgtcagacggatgagagggacgactaccctcattccatttagcac 556  Q
    |||||| |||||| ||| |||||||||| ||| ||||  |||| | ||||| |||||||||||| ||||||||||||||| ||||||||    
T  41826800 aataaggaattgtatacttttaaattagattgatgaagaataactatcagaaggatgagagggatgactaccctcattccgtttagcac 41826712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 498
Target Start/End: Original strand, 4840418 - 4840484
Alignment:
Q  432 atacaagttatagcatatcatcgataataaagaaaaaataagaaattgtgtacctttaaattaggtt 498  Q
    |||||| ||||||||||||||| | |||||||||  || |||||||||||||||||| |||||||||    
T  4840418 atacaaattatagcatatcatcaagaataaagaaggaagaagaaattgtgtacctttgaattaggtt 4840484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 429 - 490
Target Start/End: Complemental strand, 24138677 - 24138616
Alignment:
Q  429 tagatacaagttatagcatatcatcgataataaagaaaaaataagaaattgtgtacctttaa 490  Q
    ||||||||| |||||||||||||||  ||| || |||| ||||||| |||||||||||||||    
T  24138677 tagatacaaattatagcatatcatcagtaacaaggaaagaataagagattgtgtacctttaa 24138616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 15144211 - 15144263
Alignment:
Q  520 ggatgagagggacgactaccctcattccatttagcaccagaatattcagaata 572  Q
    |||||||| ||| ||||||||||||||| |||||||||||||| || ||||||    
T  15144211 ggatgagacggatgactaccctcattccgtttagcaccagaatgtttagaata 15144263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 561
Target Start/End: Complemental strand, 24138587 - 24138537
Alignment:
Q  511 ttgtcagacggatgagagggacgactaccctcattccatttagcaccagaa 561  Q
    |||||||| ||||||||| || ||||||||||||||| | |||||||||||    
T  24138587 ttgtcagaaggatgagagagatgactaccctcattccgtgtagcaccagaa 24138537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 558
Target Start/End: Complemental strand, 3950192 - 3950156
Alignment:
Q  522 atgagagggacgactaccctcattccatttagcacca 558  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  3950192 atgagagggatgactaccctcattccgtttagcacca 3950156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 465
Target Start/End: Original strand, 18341064 - 18341108
Alignment:
Q  421 taaattagtagatacaagttatagcatatcatcgataataaagaa 465  Q
    ||||||| ||||||||| ||||||||||| ||| |||||||||||    
T  18341064 taaattattagatacaaattatagcatattatcaataataaagaa 18341108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 432 - 555
Target Start/End: Original strand, 26450778 - 26450902
Alignment:
Q  432 atacaagttatagcatatcatcgataataaagaaaaaataa-gaaattgtgtacctttaaattaggttggtgaaacataattgtcagacggatgagaggg 530  Q
    |||||| ||||||||||||||| |||||||||||  ||||| |||||||||||||||| |||||||||| ||||  |||| ||||| | |||| ||||||    
T  26450778 atacaaattatagcatatcatcaataataaagaatgaataaagaaattgtgtacctttgaattaggttgatgaaggataactgtcaaaaggataagaggg 26450877  T
Q  531 acgactaccctcattccatttagca 555  Q
    | ||||||||||||||| |||||||    
T  26450878 atgactaccctcattccgtttagca 26450902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 511 - 570
Target Start/End: Complemental strand, 32517322 - 32517263
Alignment:
Q  511 ttgtcagacggatgagagggacgactaccctcattccatttagcaccagaatattcagaa 570  Q
    |||||||| |||||||||||| ||||||||||||||| |||||||||||||| |||||||    
T  32517322 ttgtcagaaggatgagagggatgactaccctcattccgtttagcaccagaatgttcagaa 32517263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 561
Target Start/End: Complemental strand, 48853802 - 48853752
Alignment:
Q  511 ttgtcagacggatgagagggacgactaccctcattccatttagcaccagaa 561  Q
    |||||||| |||||||||||| ||||||||||||||| | |||||||||||    
T  48853802 ttgtcagaaggatgagagggatgactaccctcattccgtgtagcaccagaa 48853752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 533 - 572
Target Start/End: Original strand, 267703 - 267742
Alignment:
Q  533 gactaccctcattccatttagcaccagaatattcagaata 572  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  267703 gactaccctcattccgtttagcaccagaatgttcagaata 267742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 429 - 560
Target Start/End: Complemental strand, 11340108 - 11339977
Alignment:
Q  429 tagatacaagttatagcatatcatcgataataaagaaaaaataa-gaaattgtgtacctttaaattaggttggtgaaacataattgtcagacggatgaga 527  Q
    ||||||||||||||  ||||||||| |||||||||||  ||||| |||||||||||| |||||||||||||| ||||  |||| | | ||| ||||||||    
T  11340108 tagatacaagttatgacatatcatcaataataaagaatgaataaagaaattgtgtacttttaaattaggttgatgaaggataactataagaaggatgaga 11340009  T
Q  528 gggacgactaccctcattccatttagcaccaga 560  Q
    |||| ||||| ||||||||| ||||||| ||||    
T  11340008 gggatgacta-cctcattccgtttagcagcaga 11339977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 572
Target Start/End: Complemental strand, 22730117 - 22729973
Alignment:
Q  429 tagatacaagttatagcatatcatcgataataaagaaaaaataagaaattgtgtaccttta-aattaggttgg-tgaaacataattgtcagacggatgag 526  Q
    ||||||||| |||||||||||||| ||||| ||||||  ||||||| ||||||||  |||| ||||| ||| | ||||  ||| |||||| | |||||||    
T  22730117 tagatacaaattatagcatatcat-gataacaaagaaggaataagagattgtgtatatttagaattaagtttgatgaaggatagttgtcacaaggatgag 22730019  T
Q  527 agggacgactaccctcattccatttagcaccagaatattcagaata 572  Q
    ||||| || |||||||||||| |||||||||||||| |||||||||    
T  22730018 agggatgattaccctcattccgtttagcaccagaatgttcagaata 22729973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 512 - 574
Target Start/End: Original strand, 36950066 - 36950128
Alignment:
Q  512 tgtcagacggatgagagggacgactaccctcattccatttagcaccagaatattcagaataat 574  Q
    ||||||| |||||||||||| ||||||||||||| | | |||||||||||| |||||||||||    
T  36950066 tgtcagaaggatgagagggatgactaccctcatttcgtctagcaccagaatgttcagaataat 36950128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 35941066 - 35941118
Alignment:
Q  520 ggatgagagggacgactaccctcattccatttagcaccagaatattcagaata 572  Q
    |||||| ||||| ||||||||||||||| ||||||| |||||| |||||||||    
T  35941066 ggatgatagggatgactaccctcattccgtttagcatcagaatgttcagaata 35941118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 486
Target Start/End: Complemental strand, 10491438 - 10491381
Alignment:
Q  429 tagatacaagttatagcatatcatcgataataaagaaaaaataagaaattgtgtacct 486  Q
    ||||||||| |||||| ||||||||| ||| ||||||  ||||||||||||| |||||    
T  10491438 tagatacaaattatagtatatcatcggtaacaaagaaggaataagaaattgtatacct 10491381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 429 - 572
Target Start/End: Complemental strand, 44626407 - 44626263
Alignment:
Q  429 tagatacaagttatagcatatcatcgataataaagaaaaaataagaaattgtgtaccttta-aattaggttggtgaaacataattgtcagacggatgaga 527  Q
    ||||||||| |||||||||||||    ||||||||||  |  |||||| | |||||||||  |||||||||| ||||  ||||  |||||| ||||||||    
T  44626407 tagatacaaattatagcatatcagtagtaataaagaatgatgaagaaactatgtaccttttgaattaggttgatgaaggataaccgtcagaaggatgaga 44626308  T
Q  528 gggacgactaccctcattccatttagcaccagaatattcagaata 572  Q
    |||| ||||||||||||||| ||||||||  ||||||||||||||    
T  44626307 gggatgactaccctcattccgtttagcactggaatattcagaata 44626263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 429 - 499
Target Start/End: Complemental strand, 39517647 - 39517576
Alignment:
Q  429 tagatacaagttatagcatatcatcgataataaagaaaaaat-aagaaattgtgtacctttaaattaggttg 499  Q
    ||||||||||||||||||||||||| |||| ||||||  ||| |||||||||||||||||||||||||||||    
T  39517647 tagatacaagttatagcatatcatcaataacaaagaatgaatgaagaaattgtgtacctttaaattaggttg 39517576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 487
Target Start/End: Complemental strand, 1262602 - 1262547
Alignment:
Q  432 atacaagttatagcatatcatcgataataaagaaaaaataagaaattgtgtacctt 487  Q
    ||||||||||||||||||||| ||||||||||||  |||||||| |||||||||||    
T  1262602 atacaagttatagcatatcattgataataaagaaggaataagaatttgtgtacctt 1262547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 572
Target Start/End: Complemental strand, 38144080 - 38144020
Alignment:
Q  512 tgtcagacggatgagagggacgactaccctcattccatttagcaccagaatattcagaata 572  Q
    ||||||| |||||||||||| ||||||| ||||||| | ||||||| |||| |||||||||    
T  38144080 tgtcagaaggatgagagggatgactaccgtcattccgtctagcaccggaatgttcagaata 38144020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 487
Target Start/End: Complemental strand, 18325146 - 18325083
Alignment:
Q  424 attagtagatacaagttatagcatatcatcgataataaagaaaaaataagaaattgtgtacctt 487  Q
    |||| |||||||||||||||||||||||||  ||| ||| ||| || |||||||| ||||||||    
T  18325146 attattagatacaagttatagcatatcatcagtaacaaataaagaagaagaaattatgtacctt 18325083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 567
Target Start/End: Original strand, 26005482 - 26005529
Alignment:
Q  520 ggatgagagggacgactaccctcattccatttagcaccagaatattca 567  Q
    ||||||||| || ||||||||||||||| |||||||||||||| ||||    
T  26005482 ggatgagagagatgactaccctcattccgtttagcaccagaatgttca 26005529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 561
Target Start/End: Original strand, 32038043 - 32038093
Alignment:
Q  511 ttgtcagacggatgagagggacgactaccctcattccatttagcaccagaa 561  Q
    |||||||| |||||||||||| ||||||||||||||| | || ||||||||    
T  32038043 ttgtcagaaggatgagagggatgactaccctcattccgtgtaacaccagaa 32038093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 572
Target Start/End: Original strand, 17497450 - 17497510
Alignment:
Q  512 tgtcagacggatgagagggacgactaccctcattccatttagcaccagaatattcagaata 572  Q
    ||||||| |||||||| | | ||||||||||||||| |||||||||| ||| |||| ||||    
T  17497450 tgtcagaaggatgagaagaatgactaccctcattccgtttagcaccataatgttcaaaata 17497510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 414 - 558
Target Start/End: Complemental strand, 39574790 - 39574648
Alignment:
Q  414 ttagccctaaattagtagatacaagttatagcatatcatcgataataaagaaaaaataagaaattgtgtacctttaa-at-tagg-ttggtgaaacataa 510  Q
    ||||||||| ||||||||||||||||     |||||||||||||| ||||||  ||||||||||||||||||||||| || |||| ||  ||||  ||||    
T  39574790 ttagccctagattagtagatacaagt-----catatcatcgataacaaagaaggaataagaaattgtgtacctttaagatgtaggattcatgaaggataa 39574696  T
Q  511 ttgtcagacggatgagagggacgactaccctcattccatttagcacca 558  Q
     ||||||| |||||||||||| || || ||||||||| ||||||||||    
T  39574695 ctgtcagaaggatgagagggatgattatcctcattccgtttagcacca 39574648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 429 - 489
Target Start/End: Original strand, 12017576 - 12017637
Alignment:
Q  429 tagatacaagttatagcatatcatcgataataaagaaa-aaataagaaattgtgtaccttta 489  Q
    |||||| ||||||||||||||||||| || ||||||||  ||||||||||| ||||||||||    
T  12017576 tagatataagttatagcatatcatcggtagtaaagaaaggaataagaaattatgtaccttta 12017637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 490
Target Start/End: Complemental strand, 39581311 - 39581268
Alignment:
Q  447 tatcatcgataataaagaaaaaataagaaattgtgtacctttaa 490  Q
    |||||||||||| ||||||  |||||||||||||||||||||||    
T  39581311 tatcatcgataacaaagaaggaataagaaattgtgtacctttaa 39581268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 19240462 - 19240514
Alignment:
Q  520 ggatgagagggacgactaccctcattccatttagcaccagaatattcagaata 572  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||| ||||    
T  19240462 ggatgagagagatgactaccctcattccatttagcaccagaatattcataata 19240514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 39032683 - 39032734
Alignment:
Q  520 ggatgagagggacgactaccctcattccatttagcaccagaatattcagaat 571  Q
    |||||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  39032683 ggatgagagggatgactaccctcattccctttagcaccagaatgttcagaat 39032734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 556
Target Start/End: Original strand, 32285570 - 32285698
Alignment:
Q  429 tagatacaagttatagcatatcatcgataataaagaaaaaataagaaattgtgtaccttta-aattaggttgg-tgaaacataattgtcagacggatgag 526  Q
    ||||||||| |||||||||||||| || || ||||||  || |||| |||||||| ||||| ||||||||| | ||||  |||  ||||||| |||||||    
T  32285570 tagatacaaattatagcatatcat-gacaacaaagaaggaacaagagattgtgtatctttagaattaggtttgatgaatgatagctgtcagaaggatgag 32285668  T
Q  527 agggacgactaccctcattccatttagcac 556  Q
    || || ||||||||||||||| ||||||||    
T  32285669 agagatgactaccctcattccgtttagcac 32285698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 572
Target Start/End: Original strand, 32280667 - 32280772
Alignment:
Q  471 aagaaattgtgtaccttta-aattaggttgg-tgaaacataattgtcagacggatgagagggacgactaccctcattccatttag--caccagaatattc 566  Q
    |||| |||||||||||||| ||||||||| | ||||  ||| |||||||| |||||||||||| |||||||||| |||  |||||  ||||||||| |||    
T  32280667 aagagattgtgtacctttagaattaggtttgatgaaggatagttgtcagaaggatgagagggatgactaccctcgttctgtttagcacaccagaatgttc 32280766  T
Q  567 agaata 572  Q
    ||||||    
T  32280767 agaata 32280772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 3470044 - 3469995
Alignment:
Q  520 ggatgagagggacgactaccctcattccatttagcaccagaatattcaga 569  Q
    |||||||||||| || |||||||||||| |||||||||||||| ||||||    
T  3470044 ggatgagagggatgattaccctcattccgtttagcaccagaatgttcaga 3469995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 512 - 553
Target Start/End: Complemental strand, 39351063 - 39351022
Alignment:
Q  512 tgtcagacggatgagagggacgactaccctcattccatttag 553  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
T  39351063 tgtcagaaggatgagagggatgactaccctcattccatttag 39351022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 559
Target Start/End: Complemental strand, 31112576 - 31112529
Alignment:
Q  512 tgtcagacggatgagagggacgactaccctcattccatttagcaccag 559  Q
    ||||||| ||| |||||||| ||||||||||||||| |||||||||||    
T  31112576 tgtcagaaggaggagagggatgactaccctcattccgtttagcaccag 31112529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 39039696 - 39039747
Alignment:
Q  520 ggatgagagggacgactaccctcattccatttagcaccagaatattcagaat 571  Q
    ||||||||||||  |||||||||||||| ||||||||| |||| ||||||||    
T  39039696 ggatgagagggataactaccctcattccctttagcacctgaatgttcagaat 39039747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 561
Target Start/End: Original strand, 45677820 - 45677874
Alignment:
Q  507 ataattgtcagacggatgagagggacgactaccctcattccatttagcaccagaa 561  Q
    |||| ||||| | |||||||||||| ||||||||||||||| | |||||||||||    
T  45677820 ataactgtcacaaggatgagagggatgactaccctcattccgtgtagcaccagaa 45677874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 487
Target Start/End: Complemental strand, 46612103 - 46612058
Alignment:
Q  442 tagcatatcatcgataataaagaaaaaataagaaattgtgtacctt 487  Q
    ||||||||||||| ||| |||||| |||||| ||||||||||||||    
T  46612103 tagcatatcatcggtaacaaagaagaaataaaaaattgtgtacctt 46612058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 490
Target Start/End: Complemental strand, 50158459 - 50158399
Alignment:
Q  429 tagatacaagttatagcatatcatcgataataaagaaaaaataagaaattgtgtacctttaa 490  Q
    |||||||||||||||||||||||  || |||||||||   |||||| |||||||||||||||    
T  50158459 tagatacaagttatagcatatca-agacaataaagaagggataagagattgtgtacctttaa 50158399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 520 - 570
Target Start/End: Complemental strand, 9972969 - 9972919
Alignment:
Q  520 ggatgagagggacgactaccctcattccatttagcaccagaatattcagaa 570  Q
    |||||||||||| ||||||||||||||| |||||||||||||| |||||||    
T  9972969 ggatgagagggatgactaccctcattccgtttagcaccagaatgttcagaa 9972919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 507 - 569
Target Start/End: Complemental strand, 27101707 - 27101645
Alignment:
Q  507 ataattgtcagacggatgagagggacgactaccctcattccatttagcaccagaatattcaga 569  Q
    |||||| ||||| |||||||||||| ||||||||||||||| |||| ||||||||| ||||||    
T  27101707 ataattatcagaaggatgagagggatgactaccctcattccgtttaacaccagaatgttcaga 27101645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 507 - 569
Target Start/End: Complemental strand, 27143529 - 27143467
Alignment:
Q  507 ataattgtcagacggatgagagggacgactaccctcattccatttagcaccagaatattcaga 569  Q
    |||||| ||||| |||||||||||| ||||||||||||||| |||| ||||||||| ||||||    
T  27143529 ataattatcagaaggatgagagggatgactaccctcattccgtttaacaccagaatgttcaga 27143467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 22958006 - 22958058
Alignment:
Q  520 ggatgagagggacgactaccctcattccatttagcaccagaatattcagaata 572  Q
    |||||||||||| || |||||||||||| |||||||||||||| |||||||||    
T  22958006 ggatgagagggatgattaccctcattccctttagcaccagaatgttcagaata 22958058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 520 - 572
Target Start/End: Complemental strand, 23830386 - 23830334
Alignment:
Q  520 ggatgagagggacgactaccctcattccatttagcaccagaatattcagaata 572  Q
    |||||||||||| || |||||||||||| |||||||||||||| |||||||||    
T  23830386 ggatgagagggatgattaccctcattccctttagcaccagaatgttcagaata 23830334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 567
Target Start/End: Original strand, 32932176 - 32932308
Alignment:
Q  424 attagtagatacaagttatagcatatcatcgataataaagaaaa-aataagaaattgtgtacctttaaattaggttggtgaaacataattgtcagacgga 522  Q
    |||| ||||||||||||||| |||||||    ||||||||||   ||||||||||||||||||||| ||||||||||  |||| | ||         | |    
T  32932176 attaatagatacaagttataacatatcag---taataaagaagggaataagaaattgtgtacctttgaattaggttgacgaaagagaa---------gaa 32932263  T
Q  523 tgagagggacgactaccctcattccatttagcaccagaatattca 567  Q
    ||||||||| |||||||||||||||||||||||||| ||| ||||    
T  32932264 tgagagggatgactaccctcattccatttagcaccaaaatgttca 32932308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 521 - 561
Target Start/End: Complemental strand, 18338306 - 18338266
Alignment:
Q  521 gatgagagggacgactaccctcattccatttagcaccagaa 561  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  18338306 gatgagagggatgactaccctcattccgtttagcaccagaa 18338266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 23848516 - 23848568
Alignment:
Q  520 ggatgagagggacgactaccctcattccatttagcaccagaatattcagaata 572  Q
    |||||||||||| |||| | |||||||| |||||||||||||| |||||||||    
T  23848516 ggatgagagggatgactgcgctcattccctttagcaccagaatgttcagaata 23848568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Original strand, 7553360 - 7553397
Alignment:
Q  520 ggatgagagggacgactaccctcattccatttagcacc 557  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  7553360 ggatgagagggatgactaccctcattccgtttagcacc 7553397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 515
Target Start/End: Original strand, 13393511 - 13393595
Alignment:
Q  432 atacaagttatagcatatcatcgataataaagaaa-aaataagaaattgtgtacctttaaattaggttggtgaaacataattgtc 515  Q
    |||||||||| | ||||| ||| ||| |||||||| ||||||| |||||||||||||| ||||||||| |||||  |||||||||    
T  13393511 atacaagttacaacatataatcaatagtaaagaaagaaataaggaattgtgtacctttgaattaggttcgtgaaggataattgtc 13393595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 515
Target Start/End: Original strand, 13396650 - 13396734
Alignment:
Q  432 atacaagttatagcatatcatcgataataaagaaa-aaataagaaattgtgtacctttaaattaggttggtgaaacataattgtc 515  Q
    |||||||||| | ||||| ||| ||| |||||||| ||||||| |||||||||||||| ||||||||| |||||  |||||||||    
T  13396650 atacaagttacaacatataatcaatagtaaagaaagaaataaggaattgtgtacctttgaattaggttcgtgaaggataattgtc 13396734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 561
Target Start/End: Complemental strand, 33366959 - 33366909
Alignment:
Q  511 ttgtcagacggatgagagggacgactaccctcattccatttagcaccagaa 561  Q
    |||||||| |||||||||||| ||||||| ||||||||| |||||||||||    
T  33366959 ttgtcagaaggatgagagggatgactaccttcattccatgtagcaccagaa 33366909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 558
Target Start/End: Complemental strand, 33361808 - 33361761
Alignment:
Q  511 ttgtcagacggatgagagggacgactaccctcattccatttagcacca 558  Q
    |||||||| |||||||||||| ||||||||||||||| | ||||||||    
T  33361808 ttgtcagaaggatgagagggatgactaccctcattccgtgtagcacca 33361761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 534 - 572
Target Start/End: Original strand, 24423165 - 24423203
Alignment:
Q  534 actaccctcattccatttagcaccagaatattcagaata 572  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  24423165 actaccctcattccgtttagcaccagaatgttcagaata 24423203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 483
Target Start/End: Original strand, 44160562 - 44160616
Alignment:
Q  429 tagatacaagttatagcatatcatcgataataaagaaaaaataagaaattgtgta 483  Q
    ||||||||| ||||||||||||||| |||| ||||||| | ||| ||||||||||    
T  44160562 tagatacaaattatagcatatcatcaataacaaagaaagattaataaattgtgta 44160616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 490
Target Start/End: Original strand, 18890967 - 18891028
Alignment:
Q  429 tagatacaagttatagcatatcatcgataataaagaaaaaataagaaattgtgtacctttaa 490  Q
    ||||||||| ||||||||||||||| |||| ||  ||| |||||||  ||||||||||||||    
T  18890967 tagatacaaattatagcatatcatcaataacaagcaaagaataagaggttgtgtacctttaa 18891028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 521 - 561
Target Start/End: Complemental strand, 4430 - 4390
Alignment:
Q  521 gatgagagggacgactaccctcattccatttagcaccagaa 561  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  4430 gatgagagggatgactaccctcattccgtttagcaccagaa 4390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 521 - 561
Target Start/End: Complemental strand, 9130 - 9090
Alignment:
Q  521 gatgagagggacgactaccctcattccatttagcaccagaa 561  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  9130 gatgagagggatgactaccctcattccgtttagcaccagaa 9090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University