View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4929-Insertion-1 (Length: 1072)
Name: NF4929-Insertion-1
Description: NF4929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4929-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 645 - 1070
Target Start/End: Complemental strand, 450740 - 450305
Alignment:
| Q |
645 |
aaaaccaatttgatagtaaacctcttctaaattctaatgagtgaactatgtcgaagacctaggctatagtctttcaattaaatctcatgctgcagactgc |
744 |
Q |
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| T |
450740 |
aaaaccaatttgatagtaaacctcttctaaattctaatgagtgaactatgtcgaagacctaggctacagtctttcaattaaatctcatgctgcagactgc |
450641 |
T |
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| Q |
745 |
agttgtcaatcccttacttataggtagtgtgtcataggttaattgtatacaagaagatattacttagaaaaactcataatcaaaatataagatcatttta |
844 |
Q |
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| T |
450640 |
agttgtcaatcccttacttataggtagtgtgtcataggctaattgtatacaagaagatattacttagaaatactcataatcaaaatataagatcatttta |
450541 |
T |
|
| Q |
845 |
atatttctatatattctataagtactagttgcaaagtttatccagtctagcaacacaataatacactatc-aataactgccaacattagaaacctttcaa |
943 |
Q |
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| T |
450540 |
atatttctatatattctataagtactagttgcaaagtttatccaatctaacaacacaataatacactatctaataactgccaacattagaaacctttcaa |
450441 |
T |
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| Q |
944 |
tgcaagag-acatacttctgttatgaattcaactcagtgatcc-atctggaggtggccag-accacttgaa--tatccggat-atcagaca--ggtgaaa |
1035 |
Q |
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| T |
450440 |
tgcaagagaacatac-tctgttatgaattcaactcagtgatccaatctggaggtggccagaacaacttgaaataatccggataatcagacaagggtgaaa |
450342 |
T |
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| Q |
1036 |
cccgaccttgatcc-agtgaaaaac-ctcatattacg |
1070 |
Q |
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| T |
450341 |
cccgaccttgatccaagtgaaaaacactcatattacg |
450305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 579 - 626
Target Start/End: Complemental strand, 450822 - 450775
Alignment:
| Q |
579 |
aattacctctaccttcttttaacgcctttgaaacaactacccctaacc |
626 |
Q |
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| T |
450822 |
aattacctctaccttcttttaacgcctttgaaacaactacccctaacc |
450775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 7686661 - 7686729
Alignment:
| Q |
12 |
tcaccaacttataatttgaattgatctctctcccacagtgcaactacatggtcctccttatgtatattt |
80 |
Q |
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| T |
7686661 |
tcaccaacatataatttgaattgatctctatcccacagtgcaactacatggtgctccttatgtctattt |
7686729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 802 - 917
Target Start/End: Original strand, 9394903 - 9395015
Alignment:
| Q |
802 |
tattacttagaaaaactcataatcaaaatataagatcattttaatatttctatatattctataagtactagttgcaaagtttatccagtctagcaacaca |
901 |
Q |
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| T |
9394903 |
tattagttaggaaaaatcataataaaaatataagaacatttcaatatttctat---ttctataagtactaggttcaaagattattcaatctaacaataaa |
9394999 |
T |
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| Q |
902 |
ataatacactatcaat |
917 |
Q |
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| T |
9395000 |
ataatgcactatcaat |
9395015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 803 - 854
Target Start/End: Original strand, 9447971 - 9448022
Alignment:
| Q |
803 |
attacttagaaaaactcataatcaaaatataagatcattttaatatttctat |
854 |
Q |
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|||| |||||||||||||| ||||| ||||||||||||| ||||||||||| |
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| T |
9447971 |
attagttagaaaaactcatggtcaaagtataagatcatttcaatatttctat |
9448022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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