View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4929-Insertion-11 (Length: 684)
Name: NF4929-Insertion-11
Description: NF4929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4929-Insertion-11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 8 - 684
Target Start/End: Complemental strand, 21145423 - 21144746
Alignment:
| Q |
8 |
ataactcaccataaccacaacctcaatctcttccctcgtaaatggcaccaccaatagagcattttggtcctccgaaatcctttgaaaagatactccatcc |
107 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21145423 |
ataactctccatgtccacaacctcaatctcttccctcgtaaatggcaccaccaatagagcattttggtcctccgaaatcctttgaaaagatactccatcc |
21145324 |
T |
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| Q |
108 |
aatctcagccggtcacctccctcctctattacttggtttctaaaataattcaccaccactctcctcacctccatcggggtttgggcccactccccattaa |
207 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21145323 |
aatctcagccggtcacctccctcctccgttacttggtttctaaaatatttcaccaccactctcctcacctccatcagggtttgggcccactccccattaa |
21145224 |
T |
|
| Q |
208 |
ccttcaagg-tcttaaacaatttccacctcgtcttgccttcatacaattatggaaaaagttggtgttagaatccccttttttaagccacttgatacgaga |
306 |
Q |
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||||||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21145223 |
ccttcaaagctcttaaacaatttccacttcatcttgccttcatacaattatggaaaaagttggtgttagaatccccttctttaagccacttgatacgaga |
21145124 |
T |
|
| Q |
307 |
tctttgcaccaccaatgaatcttttgctttaagaagactccataaagcacaaattttttcttttcagactcggacatcttcatcactcaacaacgacaac |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
21145123 |
tctttgcaccaccaatgaatcttttgctttaagaagactccataaagcacaaaaattttcttttcggactcggacatcttcatcattcaacaacgacaac |
21145024 |
T |
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| Q |
407 |
tctccccttaaatccacctcttgtacatcttcttttaacctagaaattctctcttacatcgaaccatgctcctccttgttccactctctaagccttcctt |
506 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21145023 |
tctccccttaaatccacctcttgtatatcttcttttaacctagaaattctctcttacatcgaaccatactcctccttgttccactctctaagccttcctt |
21144924 |
T |
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| Q |
507 |
taaccccttttagtttctcttttaacacaaatcccatccatcacgttaaatgttgtgaattccacacctcctcaaccacctctttgatttgcctattatc |
606 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21144923 |
taaccccttttagtttctcttttaacagaaatcccatccatcacgttaaatgttgtgaattccacacctcctcaaccacctctttgatttgcctattatc |
21144824 |
T |
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| Q |
607 |
caaccaatagtgtagattttgattctagccacatccaatatcctccttaaaattgtatcctcatcaaaatccaagaac |
684 |
Q |
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| T |
21144823 |
caaccaatagtgtagattttgattctagccacatccaatatcctccttaaaattgtatcctcatcaaaatccaagaac |
21144746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 261
Target Start/End: Complemental strand, 13309555 - 13309428
Alignment:
| Q |
135 |
attacttggtttctaaaataattcaccaccactctcctcacctccatcggggtttgggcccactccccattaaccttcaaggtc-ttaaacaatttccac |
233 |
Q |
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|||||||| ||| ||||||| | |||||| |||||| ||||||| ||| ||||| || || ||||||||||| ||||| | ||| ||||||||||| |
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| T |
13309555 |
attacttgatttgtaaaatactctaccaccggtctcctaacctccaccggtgtttgcgcacaatccccattaactttcaaatcccttatacaatttccac |
13309456 |
T |
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| Q |
234 |
ctcgtcttgccttcatacaattatggaa |
261 |
Q |
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| T |
13309455 |
ttactcttgccttcatacaattgtggaa |
13309428 |
T |
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