View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4929-Insertion-2 (Length: 937)

Name: NF4929-Insertion-2
Description: NF4929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4929-Insertion-2
NF4929-Insertion-2
[»] chr7 (14 HSPs)
chr7 (389-800)||(33427258-33427669)
chr7 (12-391)||(33427829-33428208)
chr7 (24-495)||(33416340-33416804)
chr7 (24-473)||(33424393-33424850)
chr7 (24-494)||(33410491-33410956)
chr7 (644-797)||(37502694-37502850)
chr7 (682-800)||(47814731-47814853)
chr7 (672-800)||(32248245-32248377)
chr7 (865-937)||(47814926-47814999)
chr7 (865-937)||(33427118-33427191)
chr7 (287-438)||(33436761-33436912)
chr7 (24-75)||(33436545-33436596)
chr7 (865-912)||(37502920-37502967)
chr7 (550-626)||(33416867-33416942)
[»] chr6 (1 HSPs)
chr6 (643-800)||(10461551-10461712)
[»] chr1 (10 HSPs)
chr1 (644-799)||(39481993-39482152)
chr1 (644-800)||(2170895-2171060)
chr1 (663-800)||(28851958-28852099)
chr1 (294-429)||(24984717-24984852)
chr1 (294-429)||(24990547-24990682)
chr1 (716-800)||(21401582-21401666)
chr1 (657-755)||(6843529-6843631)
chr1 (865-905)||(21401735-21401775)
chr1 (32-86)||(24985078-24985132)
chr1 (32-86)||(24990908-24990962)
[»] chr2 (2 HSPs)
chr2 (644-797)||(18747772-18747929)
chr2 (714-800)||(4867465-4867550)
[»] chr8 (3 HSPs)
chr8 (635-800)||(34872070-34872239)
chr8 (642-800)||(31371437-31371596)
chr8 (865-905)||(34872306-34872346)
[»] chr4 (3 HSPs)
chr4 (732-800)||(53239859-53239927)
chr4 (644-707)||(53239933-53239996)
chr4 (880-934)||(53239722-53239777)
[»] scaffold0262 (1 HSPs)
scaffold0262 (24-75)||(5181-5232)


Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 389 - 800
Target Start/End: Complemental strand, 33427669 - 33427258
Alignment:
Q  389 tcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaagcccatttgatcaaaatttaggtgtgaaacatat 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  33427669 tcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaagcccatttgatcaaaatttaggtttgaaatatat 33427570  T
Q  489 ttctctcctaagtatggaaattaaatgtaaaatatgtgtccgggaaaatgttcctagaatgaatctcaatgaaaagaattgctagctagcaaatgcttcg 588  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33427569 ttctctcctaagtatggaaattaaatgtaaaatatgtgtcggggaaaatgttcctagaatgaatctcaatgaaaagaattgctagctagcaaatgcttcg 33427470  T
Q  589 aaaatgttattgttttgatttgatgaattttgctattcgactagggtatatatatggcaatttttatggtactttaaacaaagttgagtgttttggtact 688  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33427469 aaaatgttattgttttgatttgatgaattttgttattcgactagggtatatatatggcaatttttatggtactttaaacaaaattgagtgttttggtact 33427370  T
Q  689 ctcaaatgtttaaccaataataaccatttcaattaaatgatccatgtcaacattattaaagattgacttgagggaaagagttttggtacacttttctatt 788  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33427369 ctcaaatatttaaccaataataaccatttcaattaaatgatcaatgccaacattattaaggattgacttgagggaaagagttttggtacacttttctatt 33427270  T
Q  789 caatttaacccc 800  Q
    ||||||||||||    
T  33427269 caatttaacccc 33427258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 12 - 391
Target Start/End: Complemental strand, 33428208 - 33427829
Alignment:
Q  12 cagtctttaggggaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgcatctctgaaagaatgcgccgttcactttgaaaacatt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33428208 cagtctttaggggaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgcatctctgaaagaatgtgccgttcactttgaaaacatt 33428109  T
Q  112 gtgtcttgaagggtcatagctgaaaactaaaaataaagaagataaaacgtaattagttcgtattagattaataccagttcatctataaaagttaaaatta 211  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33428108 gtgtcttgaagggtcatagttgaaaactaaaaataaagaagataaaacgtaattagttcgtattagattaataccagttcatctataaaagttaaaatta 33428009  T
Q  212 tgatatacaataatgaatttagtaatcgagtatgaactaaataaactttaaaccaaatggaaaatcgtattatccttttacataccaagattgtcaccaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33428008 tgatatacaataatgaatttagtaatcgagtatgaactaaataaactttaaaccaaatggaaaatcgtattatccttttacataccaagattgtcaccaa 33427909  T
Q  312 catgaaaaactttgtcttgcgcccattgagtgtaattgaagttaatagtccagccattgtcatcacccacaatatgatca 391  Q
    || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33427908 cacgaaaaactttgtcttacgcccattgagtgtaattgaagttaatagtccagccattgtcatcacccacaatatgatca 33427829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 24 - 495
Target Start/End: Original strand, 33416340 - 33416804
Alignment:
Q  24 gaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgcatctctgaaagaatgcgccgttcactttgaaaacattgtgtcttgaagg 123  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| || ||| |||||||| ||||||||||| ||||||||    
T  33416340 gaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcactttaaaaacattgtgccttgaagg 33416439  T
Q  124 gtcatagctgaaaactaaaaataaagaagataaaacgtaattagttcgtattagattaataccagttcatctataaaagttaa----aattatgatatac 219  Q
    ||||||| |||||||||||||   ||| |||||||   |||||| || | || ||| |||||            |||||||||    || ||||| ||||    
T  33416440 gtcatagttgaaaactaaaaa---aga-gataaaataaaattagatcatgtttgataaatac------------aaaagttaattataactatgagatac 33416523  T
Q  220 aataatgaatttagtaatcgagtatgaactaaataaactttaaaccaaatggaaaatcgtattatccttttacataccaagattgtcaccaacatgaaaa 319  Q
    | |||| | || || ||| || |||||||||||||||||| |||||||||||| | |  | || |||||||||||||| || ||||| |||||| |||||    
T  33416524 actaattagttaagcaattgactatgaactaaataaacttgaaaccaaatggacatttattttttccttttacatacctaggttgtctccaacacgaaaa 33416623  T
Q  320 actttgtcttgcgcccattgagtgtaattgaagttaatagtccagccattgtcatcacccacaatatgatcagt---agccattgcaactgaggaaaata 416  Q
    ||||||||||| ||||||||||||||||  || | ||  ||||| || ||||||||||| ||||||| ||||||   ||| ||||||||||| |||| ||    
T  33416624 actttgtcttgagcccattgagtgtaatcaaaatcaacggtccaacccttgtcatcaccaacaatataatcagttgcagcaattgcaactgatgaaagta 33416723  T
Q  417 aaaccattgaaatagctaggatcaagaacacacgagaag--cccatttgatcaaaatttaggtgtgaaacatatttctctc 495  Q
    ||||||| ||||| |  |||||||| |  ||||||||||   |||||||||||||||||  || || || |||||||||||    
T  33416724 aaaccatggaaatggaaaggatcaaaactacacgagaagaagccatttgatcaaaatttgagtttggaaaatatttctctc 33416804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 24 - 473
Target Start/End: Original strand, 33424393 - 33424850
Alignment:
Q  24 gaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgcatctctgaaagaatgcgccgttcactttgaaaacattgtgtcttgaagg 123  Q
    |||| ||||||||||| |||||||||||||| |||| ||||||||||||||| || ||||||| || ||| || ||||||||||||||||| ||||  ||    
T  33424393 gaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttgccgg 33424492  T
Q  124 gtcatagctgaaaactaaaaataaagaagataaaacgtaattagttcgtattagattaataccagttcatct--ataaaagttaa----aattatgatat 217  Q
     |||||| |||||||||||||  |||||||| ||||  ||||||||| ||||||||||||||  ||||||||  | |||||||||    ||| || ||||    
T  33424493 atcatagttgaaaactaaaaa-gaagaagatgaaacaaaattagttcatattagattaatacatgttcatctaaacaaaagttaattataatcataatat 33424591  T
Q  218 acaataatgaatttagtaatcgagtatgaactaaataaactttaaaccaaatggaaaatcgtattat-ccttttacataccaagattgtcaccaacatga 316  Q
     || |||  | ||  | | | || ||| |||||||||||||| |||||||||| ||| | || || | ||||||||||||| |  ||||| |||||| |     
T  33424592 gcactaactagttatgcagttgattataaactaaataaacttgaaaccaaatgaaaatttgttttttcccttttacatacctaagttgtctccaacacgg 33424691  T
Q  317 aaaactttgtcttgcgcccattgagtgtaattgaagttaatagtccagccattgtcatcacccacaatatgatcagtagccattgcaactgaggaaaata 416  Q
    |||||||||||||| ||||||||||||||||  || | ||  ||||| || ||||||||||| ||||| |||||||| || ||||||||||| |||| ||    
T  33424692 aaaactttgtcttgagcccattgagtgtaatcaaaatcaacggtccaacccttgtcatcaccaacaatgtgatcagttgcaattgcaactgatgaaagta 33424791  T
Q  417 aaaccattgaaatagctaggatcaagaacacacgagaag--cccatttgatcaaaattt 473  Q
    ||||||| ||||| |  |||||||| |  ||||||||||   |||||||||||||||||    
T  33424792 aaaccatggaaatggaaaggatcaaaactacacgagaagaagccatttgatcaaaattt 33424850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 24 - 494
Target Start/End: Original strand, 33410491 - 33410956
Alignment:
Q  24 gaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgcatctctgaaagaatgcgccgttcactttgaaaacattgtgtcttgaagg 123  Q
    |||| ||||||||||| |||||||||||||| |||| ||||||||||||||| || ||||||| || ||| || ||||||||||||||||| ||||  ||    
T  33410491 gaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttgccgg 33410590  T
Q  124 gtcatagctgaaaactaaaaataaagaagataaaacgtaattagttcgtattagattaataccagttcatct--ataaaagttaa----aattatgatat 217  Q
     |||||| ||||||||||||| |||| |||| ||||  ||||||||| ||||||||||||||  ||||||||  | |||||||||    |||||||| ||    
T  33410591 atcatagttgaaaactaaaaagaaag-agatgaaacaaaattagttcatattagattaatacatgttcatctaaacaaaagttaattataattatgagat 33410689  T
Q  218 acaataatgaatttagtaatcgagtatgaactaaataaactttaaaccaaatggaaaatcgtattatccttt---tacataccaagattgtcaccaacat 314  Q
    ||| |||| | || |  ||| || ||||               |||||||||||| | | || || ||||||   |||||||| |||||||| ||||||     
T  33410690 acactaattagttaaacaattgaatatg---------------aaaccaaatggatatttgttttttccttttattacatacctagattgtctccaacac 33410774  T
Q  315 gaaaaactttgtcttgcgcccattgagtgtaattgaagttaatagtccagccattgtcatcacccacaatatgatcagtagccattgcaactgaggaaaa 414  Q
    |||||||||||||||| ||||| ||||||||||  || | ||  ||||| || ||||||||||| ||||| |||||||| || ||||||||||| ||||     
T  33410775 gaaaaactttgtcttgagcccactgagtgtaatcaaaatcaacggtccaacccttgtcatcaccaacaatgtgatcagttgcaattgcaactgatgaaag 33410874  T
Q  415 taaaaccattgaaatagctaggatcaagaacacacgagaag--cccatttgatcaaaatttaggtgtgaaacatatttctct 494  Q
    ||||||||| |||||||  |||||||| |  ||||||||||   |||||||||||||||||  || || || ||||||||||    
T  33410875 taaaaccatggaaatagaaaggatcaaaactacacgagaagaagccatttgatcaaaatttgagtttggaaaatatttctct 33410956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 644 - 797
Target Start/End: Original strand, 37502694 - 37502850
Alignment:
Q  644 ggcaatttttatggtactttaaacaaagttgagtgttttggtactctcaaatgtttaaccaata----ataaccatttcaattaaatgatccatgtcaac 739  Q
    |||||||| |||||||||  ||||||| ||||||||||||||||||||||||||||||||||||    |||  ||||||||||||||||||||||||| |    
T  37502694 ggcaatttctatggtactccaaacaaaattgagtgttttggtactctcaaatgtttaaccaatagaaaatagtcatttcaattaaatgatccatgtcagc 37502793  T
Q  740 attattaaagattgacttgagggaaagagttttggtacacttttctattcaatttaac 797  Q
    ||||||||| |||||||| | | ||||||||||||||||||| |||||||||||||||    
T  37502794 attattaaatattgactt-atgaaaagagttttggtacacttgtctattcaatttaac 37502850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 682 - 800
Target Start/End: Original strand, 47814731 - 47814853
Alignment:
Q  682 tggtactctcaaatgtttaaccaata--ataac--catttcaattaaatgatccatgtcaacattattaaagattgacttgagggaaagagttttggtac 777  Q
    ||||||||||||||||||||||||||  |||    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  47814731 tggtactctcaaatgtttaaccaatagaatagtgtcatttcaattaaatgatccatgttaacattattaaagattgacttgagggaaagagtttttgtac 47814830  T
Q  778 acttttctattcaatttaacccc 800  Q
    |||||||||||||||||||||||    
T  47814831 acttttctattcaatttaacccc 47814853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 672 - 800
Target Start/End: Original strand, 32248245 - 32248377
Alignment:
Q  672 ttgagtgttttggtactctcaaatgtttaaccaataataacc----atttcaattaaatgatccatgtcaacattattaaagattgacttgagggaaaga 767  Q
    ||||||||||||||||||||||||||||||||||||  ||      ||||||||| || |||||||||||||||||||||||||||| || | |||||||    
T  32248245 ttgagtgttttggtactctcaaatgtttaaccaatagaaaagtgttatttcaattcaaagatccatgtcaacattattaaagattgatttaaaggaaaga 32248344  T
Q  768 gttttggtacacttttctattcaatttaacccc 800  Q
    |||||||||||||| ||||||||||||||||||    
T  32248345 gttttggtacacttctctattcaatttaacccc 32248377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 865 - 937
Target Start/End: Original strand, 47814926 - 47814999
Alignment:
Q  865 aatcattaactgtcatcacaattttctctccaacattcatcttctc-aacgtaaccttctctttttctttccgg 937  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47814926 aatcattaattgtcatcgcaattttctctccaacattcatcttctcaaacgtaaccttctctttttctttccgg 47814999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 865 - 937
Target Start/End: Complemental strand, 33427191 - 33427118
Alignment:
Q  865 aatcattaactgtcatcacaattttctctccaacattcatcttctc-aacgtaaccttctctttttctttccgg 937  Q
    |||||||||| |||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  33427191 aatcattaacggtcatcgcaattttctctccaacattcatcttctcaaacgtaatcttctctttttctttccgg 33427118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 287 - 438
Target Start/End: Original strand, 33436761 - 33436912
Alignment:
Q  287 ttttacataccaagattgtcaccaacatgaaaaactttgtcttgcgcccattgagtgtaattgaagttaatagtccagccattgtcatcacccacaatat 386  Q
    |||| ||||||||| |||||||||||| | ||||| ||||| || | ||| ||||| || || || | || |||||| || ||||||||||| ||||| |    
T  33436761 ttttccataccaaggttgtcaccaacacggaaaaccttgtcctgagtccactgagtatagttaaaatcaacagtccaacccttgtcatcaccaacaatgt 33436860  T
Q  387 gatcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggat 438  Q
    |||| |  |||||||||||||| ||||  |||||||||||||| || |||||    
T  33436861 gatcggctgccattgcaactgaagaaagcaaaaccattgaaattgcgaggat 33436912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 33436545 - 33436596
Alignment:
Q  24 gaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgca 75  Q
    |||| ||||||||||| ||||| |||||||| |||| |||||||||||||||    
T  33436545 gaatgatatcctttcccgtagagagtgcttcattttttggtggaaaagtgca 33436596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 865 - 912
Target Start/End: Original strand, 37502920 - 37502967
Alignment:
Q  865 aatcattaactgtcatcacaattttctctccaacattcatcttctcaa 912  Q
    |||||||||| | ||||||||||||||||||||| |||||| ||||||    
T  37502920 aatcattaaccgccatcacaattttctctccaaccttcatcatctcaa 37502967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 550 - 626
Target Start/End: Original strand, 33416867 - 33416942
Alignment:
Q  550 aatctcaatgaaaagaattgctagctagcaaatgcttcgaaaatgttattgttttga-tttgatgaattttgctattc 626  Q
    ||||||||| |||||||| ||||||||||||||||| || |||| |  ||||||||| ||||||||||| ||| ||||    
T  33416867 aatctcaatcaaaagaatagctagctagcaaatgctgcgcaaatat--ttgttttgattttgatgaattgtgcaattc 33416942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 4e-47; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 643 - 800
Target Start/End: Complemental strand, 10461712 - 10461551
Alignment:
Q  643 tggcaatttttatggtactttaaacaaagttgagtgttttggtactctcaaatgtttaaccaataataac----catttcaattaaatgatccatgtcaa 738  Q
    |||||||||  ||||||||  ||||||| |||||||||||||||||||||||| |||||||||||  ||     ||||||||||||||||||||||||||    
T  10461712 tggcaatttccatggtactccaaacaaaattgagtgttttggtactctcaaatatttaaccaatagaaaagtgtcatttcaattaaatgatccatgtcaa 10461613  T
Q  739 cattattaaagattgacttgagggaaagagttttggtacacttttctattcaatttaacccc 800  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  10461612 cattattaaagattgatttaagggaaagagttttggtacacttctctattcaatttaacccc 10461551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 8e-39; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 644 - 799
Target Start/End: Original strand, 39481993 - 39482152
Alignment:
Q  644 ggcaatttttatggtactttaaacaaagttgagtgttttggtactctcaaatgtttaaccaataataac----catttcaattaaatgatccatgtcaac 739  Q
    |||||||| ||||||||| || ||||| || |||||||||||||||||||||||||||| ||||  ||     ||||||||||||||||||| |||||||    
T  39481993 ggcaatttctatggtactctagacaaaattaagtgttttggtactctcaaatgtttaactaatagaaaagtgtcatttcaattaaatgatccttgtcaac 39482092  T
Q  740 attattaaagattgacttgagggaaagagttttggtacacttttctattcaatttaaccc 799  Q
    ||||||||||||||| |  ||||||||||||||||||||||| |||||| ||||||||||    
T  39482093 attattaaagattgattgaagggaaagagttttggtacacttctctatttaatttaaccc 39482152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 644 - 800
Target Start/End: Complemental strand, 2171060 - 2170895
Alignment:
Q  644 ggcaatttttatggtactttaaacaaagttgagtgttttggtactctcaaatgtttaaccaata--ataac--catttcaattaaatgatccatgtcaac 739  Q
    |||||||| |||| ||||  ||| ||| ||||||||||||||||||||||||||||||||||||  ||||   |||||||||||||||||| ||||||||    
T  2171060 ggcaatttctatgatactccaaataaaattgagtgttttggtactctcaaatgtttaaccaatagaataatgtcatttcaattaaatgatctatgtcaac 2170961  T
Q  740 attattaaagattgacttgagggaaagagt-----tttggtacacttttctattcaatttaacccc 800  Q
    ||||||||||||| |||| || ||||||||     |||||||||||| | ||||||||||||||||    
T  2170960 attattaaagattaacttaagagaaagagttttgttttggtacacttctatattcaatttaacccc 2170895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 663 - 800
Target Start/End: Complemental strand, 28852099 - 28851958
Alignment:
Q  663 taaacaaagttgagtgttttggtactctcaaatgtttaaccaata--ataac--catttcaattaaatgatccatgtcaacattattaaagattgacttg 758  Q
    |||| ||| ||||||||||||||||||| ||||||||||| ||||  ||||   ||||| |||||||||||||||||||| ||||||||||||||||||     
T  28852099 taaataaaattgagtgttttggtactcttaaatgtttaactaatagaataatgtcattttaattaaatgatccatgtcaatattattaaagattgactta 28852000  T
Q  759 agggaaagagttttggtacacttttctattcaatttaacccc 800  Q
    ||  ||||||||||||||||||| | ||||||||||||||||    
T  28851999 agaaaaagagttttggtacacttctatattcaatttaacccc 28851958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 294 - 429
Target Start/End: Complemental strand, 24984852 - 24984717
Alignment:
Q  294 taccaagattgtcaccaacatgaaaaactttgtcttgcgcccattgagtgtaattgaagttaatagtccagccattgtcatcacccacaatatgatcagt 393  Q
    ||||||| |||||||||||| |||||||||||||||| |||||||||||||| ||||| | ||  ||||| || || |||||||||||||  |||||||     
T  24984852 taccaaggttgtcaccaacacgaaaaactttgtcttgggcccattgagtgtagttgaaatcaacggtccaacccttttcatcacccacaacgtgatcagc 24984753  T
Q  394 agccattgcaactgaggaaaataaaaccattgaaat 429  Q
     |||||||| ||||||||||  |||||||| |||||    
T  24984752 tgccattgctactgaggaaagcaaaaccatggaaat 24984717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 294 - 429
Target Start/End: Complemental strand, 24990682 - 24990547
Alignment:
Q  294 taccaagattgtcaccaacatgaaaaactttgtcttgcgcccattgagtgtaattgaagttaatagtccagccattgtcatcacccacaatatgatcagt 393  Q
    ||||||| |||||||||||| |||||||||||||||| |||||||||||||| ||||| | ||  ||||| || || |||||||||||||  |||||||     
T  24990682 taccaaggttgtcaccaacacgaaaaactttgtcttgggcccattgagtgtagttgaaatcaacggtccaacccttttcatcacccacaacgtgatcagc 24990583  T
Q  394 agccattgcaactgaggaaaataaaaccattgaaat 429  Q
     |||||||| ||||||||||  |||||||| |||||    
T  24990582 tgccattgctactgaggaaagcaaaaccatggaaat 24990547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 716 - 800
Target Start/End: Original strand, 21401582 - 21401666
Alignment:
Q  716 ttcaattaaatgatccatgtcaacattattaaagattgacttgagggaaagagttttggtacacttttctattcaatttaacccc 800  Q
    ||||||||||||||| ||||||  ||||||||||| | |||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  21401582 ttcaattaaatgatcaatgtcaggattattaaagactaacttaaggaaaagagttttggtacacttctctattcaatttaacccc 21401666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 657 - 755
Target Start/End: Original strand, 6843529 - 6843631
Alignment:
Q  657 gtactttaaacaaagttgagtgttttggtactctcaaatgtttaaccaataataac----catttcaattaaatgatccatgtcaacattattaaagatt 752  Q
    ||||| |||||||| |||||||||| ||||||||||||||||| | |||||| |      ||||||||||||||||||||||||| |||||||| |||||    
T  6843529 gtactctaaacaaaattgagtgtttcggtactctcaaatgtttgatcaataaaagagcgacatttcaattaaatgatccatgtcagcattattagagatt 6843628  T
Q  753 gac 755  Q
    |||    
T  6843629 gac 6843631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 865 - 905
Target Start/End: Original strand, 21401735 - 21401775
Alignment:
Q  865 aatcattaactgtcatcacaattttctctccaacattcatc 905  Q
    ||||||||||||||||||||||||||| |||||| ||||||    
T  21401735 aatcattaactgtcatcacaattttctttccaaccttcatc 21401775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 24985132 - 24985078
Alignment:
Q  32 tcctttccggtagaaagtgcttcgttttgtggtggaaaagtgcatctctgaaaga 86  Q
    ||||||||||| ||||||||||| |||| || |||||||||||| || |||||||    
T  24985132 tcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaaga 24985078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 24990962 - 24990908
Alignment:
Q  32 tcctttccggtagaaagtgcttcgttttgtggtggaaaagtgcatctctgaaaga 86  Q
    ||||||||||| ||||||||||| |||| || |||||||||||| || |||||||    
T  24990962 tcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaaga 24990908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 644 - 797
Target Start/End: Original strand, 18747772 - 18747929
Alignment:
Q  644 ggcaatttttatggtactttaaacaaagttgagtgttttggtactctcaaatgtttaaccaataataac----catttcaattaaatgatccatgtcaac 739  Q
    |||||||| ||| |||||  ||||||| | ||||||||||||||||||||||||||||||||||  ||     |||||||||||||| |||||||||| |    
T  18747772 ggcaatttctatagtactccaaacaaaatcgagtgttttggtactctcaaatgtttaaccaatagaaaagtgtcatttcaattaaattatccatgtcagc 18747871  T
Q  740 attattaaagattgacttgagggaaagagttttggtacacttttctattcaatttaac 797  Q
    ||||||||| |||||||| || || | ||||||||||||||| |||||||||||||||    
T  18747872 attattaaatattgacttaagagagatagttttggtacacttgtctattcaatttaac 18747929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 714 - 800
Target Start/End: Original strand, 4867465 - 4867550
Alignment:
Q  714 atttcaattaaatgatccatgtcaacattattaaagattgacttgagggaaagagttttggtacacttttctattcaatttaacccc 800  Q
    |||||||||||||||||||| ||| |||||||| |||||||| | | ||||| ||| || ||||  || ||||||||||||||||||    
T  4867465 atttcaattaaatgatccatatcagcattattagagattgacct-aaggaaaaagtattagtacgtttgtctattcaatttaacccc 4867550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 635 - 800
Target Start/End: Original strand, 34872070 - 34872239
Alignment:
Q  635 tatatatatggcaatttttatggtactttaaacaaagttgagtgttttggtactctcaaatgtttaaccaataataac----catttcaattaaatgatc 730  Q
    |||||| | ||||||||||||||||||  || |||| |||||||||||| |||||||||||||||||| ||||  |      ||||||||||||| ||||    
T  34872070 tatataaagggcaatttttatggtactccaaccaaaattgagtgttttgttactctcaaatgtttaactaatagaagagtgtcatttcaattaaacgatc 34872169  T
Q  731 catgtcaacattattaaagattgacttgagggaaagagttttggtacacttttctattcaatttaacccc 800  Q
     |||||| |||||||||| |||||||| ||| ||| ||||||||||||| | ||||||||||||||||||    
T  34872170 gatgtcagcattattaaaaattgacttaaggaaaatagttttggtacacctctctattcaatttaacccc 34872239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 642 - 800
Target Start/End: Original strand, 31371437 - 31371596
Alignment:
Q  642 atggcaatttttatggtactttaaacaaagttgagtgttttggtactctcaaatgtttaaccaataataa----ccatttcaattaaatgatccatgtca 737  Q
    |||||||||| |||||||||| ||| ||| |||||||||||| ||||||||||| |||||||||||  ||     |||||||||||||| || ||||| |    
T  31371437 atggcaatttctatggtacttcaaataaaattgagtgttttgatactctcaaatatttaaccaatataaaagtgtcatttcaattaaataattcatgtta 31371536  T
Q  738 acattattaaagattgacttgagggaaagagttttggtacacttttctattcaatttaacccc 800  Q
     |||||||||||||||| ||   |||||||||||||||||| ||  |||||||||||||||||    
T  31371537 gcattattaaagattgattt---ggaaagagttttggtacatttcactattcaatttaacccc 31371596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 865 - 905
Target Start/End: Original strand, 34872306 - 34872346
Alignment:
Q  865 aatcattaactgtcatcacaattttctctccaacattcatc 905  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  34872306 aatcattaaccgccatcacaattttctctccaacattcatc 34872346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 732 - 800
Target Start/End: Complemental strand, 53239927 - 53239859
Alignment:
Q  732 atgtcaacattattaaagattgacttgagggaaagagttttggtacacttttctattcaatttaacccc 800  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||||||||||||    
T  53239927 atgtcaacattattaaagattgacttaagagaaagagttttggtacacttctatattcaatttaacccc 53239859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 644 - 707
Target Start/End: Complemental strand, 53239996 - 53239933
Alignment:
Q  644 ggcaatttttatggtactttaaacaaagttgagtgttttggtactctcaaatgtttaaccaata 707  Q
    |||||||| |||| ||||  ||| ||| |||||||||||||||||||||||||||||| |||||    
T  53239996 ggcaatttctatgatactccaaataaaattgagtgttttggtactctcaaatgtttaatcaata 53239933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 934
Target Start/End: Complemental strand, 53239777 - 53239722
Alignment:
Q  880 tcacaattttctctccaacattcatcttct-caacgtaaccttctctttttctttc 934  Q
    |||||||||||||||||||||||||| |||  |||||| ||| |||||||||||||    
T  53239777 tcacaattttctctccaacattcatcatctgaaacgtagcctcctctttttctttc 53239722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 5232 - 5181
Alignment:
Q  24 gaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgca 75  Q
    |||| ||||||||||| |||||||||||||| |||| |||||||||||||||    
T  5232 gaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgca 5181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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