View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4929-Insertion-3 (Length: 841)

Name: NF4929-Insertion-3
Description: NF4929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4929-Insertion-3
NF4929-Insertion-3
[»] chr6 (7 HSPs)
chr6 (196-406)||(1663724-1663925)
chr6 (460-578)||(1663552-1663670)
chr6 (8-169)||(1663942-1664103)
chr6 (464-578)||(31046676-31046792)
chr6 (621-721)||(1663412-1663510)
chr6 (643-721)||(31046853-31046929)
chr6 (758-807)||(1663327-1663377)
[»] chr4 (1 HSPs)
chr4 (287-370)||(43970824-43970907)
[»] chr3 (1 HSPs)
chr3 (268-375)||(35189455-35189562)
[»] chr7 (1 HSPs)
chr7 (27-91)||(22529104-22529168)
[»] chr8 (1 HSPs)
chr8 (26-91)||(30334778-30334843)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 4e-80; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 196 - 406
Target Start/End: Complemental strand, 1663925 - 1663724
Alignment:
Q  196 caccaatgccaaaataagaaagagagtacaatgcatgaaagtgagagnnnnnnnnnnnnnnnnngagagaagtaccagcaacatctatgccatcataaac 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||    
T  1663925 caccaatgccaaaataagaaagagagtacaatgcatgaaagtgagagagaaaaaaa---------agagaagtaccagcaacatctatgccatcataaac 1663835  T
Q  296 accacgatgaacagtaccaaaagtaccacgagcaatgacagttttgataataagtttagaaggatcaatctcccattcttgtctatttcttgtattacta 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1663834 accacgatgaacagtaccaaaagtaccacgagcaatgacagttttgataataagtttagaaggatcaatctcccattcttgtctatttcttgtattacta 1663735  T
Q  396 ttagaagaaga 406  Q
    |||||||||||    
T  1663734 ttagaagaaga 1663724  T

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Target: chr6; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 460 - 578
Target Start/End: Complemental strand, 1663670 - 1663552
Alignment:
Q  460 ccatagtccatgctctactaagatgcctttgtaattgttcatctaaactcttcagatctatttgatctgctctcacatatccaccactctcactcttctt 559  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1663670 ccatagtccatgctctactaagatgcctttgtaattgttcatctaaactcttcagatctatttgatctgctctcacatatccaccactctcactcttctt 1663571  T
Q  560 catttcttcaactcaacac 578  Q
    |||||||||||||||||||    
T  1663570 catttcttcaactcaacac 1663552  T

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Target: chr6; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 1664103 - 1663942
Alignment:
Q  8 tttgtaacatgactgacaatttaagtattgtcgattgaccagacaaaccaacatgaatctttttagcatattttgttctcactc-----ttttttgagaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||| | ||||    
T  1664103 tttgtaacatgactgacaatttaagtattgtcgattgaccagacaaaccaacatgaatctttttagcatattttgttctcactcgcacgctttctaagaa 1664004  T
Q  103 acttctcagaattgctccaagtcaaacacgtttaacagtgctgttcttcatgttatgtgagataagg 169  Q
    |||||||| ||||||||||||| ||||||||||||     | |||||||||||||||||||||||||    
T  1664003 acttctcataattgctccaagttaaacacgtttaa-----ccgttcttcatgttatgtgagataagg 1663942  T

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Target: chr6; HSP #4
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 464 - 578
Target Start/End: Original strand, 31046676 - 31046792
Alignment:
Q  464 agtccatgctctact--aagatgcctttgtaattgttcatctaaactcttcagatctatttgatctgctctcacatatccaccactctcactcttcttca 561  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31046676 agtccatgctctactgtaagatgcctttgtaattgttcgtctaaactcttcagatctatttgatctgctctcacatatccaccactctcactcttcttca 31046775  T
Q  562 tttcttcaactcaacac 578  Q
    |||||| ||||||||||    
T  31046776 tttctttaactcaacac 31046792  T

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Target: chr6; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 621 - 721
Target Start/End: Complemental strand, 1663510 - 1663412
Alignment:
Q  621 caaccctttactctttttgatactaaaactactttgaagcattaaaagtttcaaactttggatccatgtttcttgttttgaacaaaattttcattggtgg 720  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  1663510 caaccctttactttttttgatactaaaactactttgaagcattaaaagtttcaaactttggatccatg-ttcttgttttgaac-aaattttcattggtgg 1663413  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 643 - 721
Target Start/End: Original strand, 31046853 - 31046929
Alignment:
Q  643 ctaaaactactttgaagcattaaaagtttcaaactttggatccatgtttcttgttttgaacaaaattttcattggtggg 721  Q
    |||||||||||||||||| |||||||||||||||||||||| || | |||||||||||||| |||||||||||||||||    
T  31046853 ctaaaactactttgaagcgttaaaagtttcaaactttggattcaag-ttcttgttttgaac-aaattttcattggtggg 31046929  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 758 - 807
Target Start/End: Complemental strand, 1663377 - 1663327
Alignment:
Q  758 ctatttactatgtggtgaagacataaatataatgtaac-aaaacagaaaca 807  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1663377 ctatttactatgtggtgaagacataaatataatgtaacaaaaacagaaaca 1663327  T

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Target: chr4 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 287 - 370
Target Start/End: Complemental strand, 43970907 - 43970824
Alignment:
Q  287 atcataaacaccacgatgaacagtaccaaaagtaccacgagcaatgacagttttgataataagtttagaaggatcaatctccca 370  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| ||| ||||||| || ||||||||||||||||| |||||    
T  43970907 atcataaacaccacgatgaacagtgccaaaagtgccacgagcaataacacttttgatgatgagtttagaaggatcaatttccca 43970824  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 268 - 375
Target Start/End: Complemental strand, 35189562 - 35189455
Alignment:
Q  268 taccagcaacatctatgccatcataaacaccacgatgaacagtaccaaaagtaccacgagcaatgacagttttgataataagtttagaaggatcaatctc 367  Q
    ||||||||||||||  ||||||||| | |||||| ||||||||||| ||||| |||||||| | |||| | ||||| || || |||||||||||||| ||    
T  35189562 taccagcaacatcttggccatcatagaaaccacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaatttc 35189463  T
Q  368 ccattctt 375  Q
    ||| ||||    
T  35189462 ccactctt 35189455  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 22529104 - 22529168
Alignment:
Q  27 tttaagtattgtcgattgaccagacaaaccaacatgaatctttttagcatattttgttctcactc 91  Q
    |||||| |||||||| |||||  |||||||||||||| |||||| ||| |||||||| |||||||    
T  22529104 tttaagcattgtcgactgaccctacaaaccaacatgagtcttttcagcgtattttgtcctcactc 22529168  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 30334778 - 30334843
Alignment:
Q  26 atttaagtattgtcgattgaccagacaaaccaacatgaatctttttagcatattttgttctcactc 91  Q
    |||||||||||||||||||| |  ||||| |||||||| |||||||| | | ||||||| ||||||    
T  30334778 atttaagtattgtcgattgatcccacaaatcaacatgagtctttttaacgtgttttgttttcactc 30334843  T

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