View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4929-Insertion-6 (Length: 490)
Name: NF4929-Insertion-6
Description: NF4929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4929-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 46485012 - 46484766
Alignment:
| Q |
8 |
gtcgcatccaaaattgtcctaacctaaaatataatgatgtaaatattgtcgtgcataatttattaactaactccaatctctgtccattggatgatcctcc |
107 |
Q |
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| T |
46485012 |
gtcgcatccaaaattgtcctaacctaaaatataatgatgtaaatattgtcgtgcataatttattaactaactccaacctctgtccattggatgatcctcc |
46484913 |
T |
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| Q |
108 |
atctgtctatttcttaacacatcacttggtgtaaaaattctagcccggcctgttaatccgtctcttaaa-tatgagtcgagtatgatcggaactctaaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
46484912 |
atctgtctatttcttaacacatcacttggtgtaaaaattctagcccggactgttaatccgtctcttaaattttgagtcgagtatgatcggaactctaaaa |
46484813 |
T |
|
| Q |
207 |
acttatataagacatacatcatcttattactattataaacaatattt |
253 |
Q |
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| T |
46484812 |
acttatataagacatacatcatcttgttactattataaacaatattt |
46484766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 3447656 - 3447585
Alignment:
| Q |
231 |
tattactattataaacaatatttaacattttaaacttatttaataaataatgtatawagtctatattaaaga |
302 |
Q |
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| T |
3447656 |
tattattattataaataaaatttaacattttagatttattcaataaataatgtatgtagcctatattaaaga |
3447585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 37739197 - 37739153
Alignment:
| Q |
237 |
tattataaacaatatttaacattttaaacttatttaataaataat |
281 |
Q |
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| T |
37739197 |
tattataagcaaaatttaacattttaagtttatttaataaataat |
37739153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 53683338 - 53683286
Alignment:
| Q |
233 |
ttactattataaacaatatttaacattttaaacttatttaataaataatgtat |
285 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | |||| | |||| |||||| |
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|
| T |
53683338 |
ttactattataaacaaaatttaacattttaaattcatttgaaaaatgatgtat |
53683286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 285
Target Start/End: Original strand, 36058780 - 36058830
Alignment:
| Q |
235 |
actattataaacaatatttaacattttaaacttatttaataaataatgtat |
285 |
Q |
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|||||||||||||| ||||||||||||| | ||||||| ||||||| |||| |
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|
| T |
36058780 |
actattataaacaaaatttaacattttagatttatttattaaataaagtat |
36058830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 24353807 - 24353857
Alignment:
| Q |
233 |
ttactattataaacaatatttaacattttaaacttatttaataaataatgt |
283 |
Q |
| |
|
|||||||||||||||| | || |||||||||| ||||||||||||| |||| |
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|
| T |
24353807 |
ttactattataaacaaaaattcacattttaaatttatttaataaatgatgt |
24353857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 36547347 - 36547400
Alignment:
| Q |
232 |
attactattataaacaatatttaacattttaaacttatttaataaataatgtat |
285 |
Q |
| |
|
||||||||||||||||| | || |||||||||| | ||||||||||| |||||| |
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| T |
36547347 |
attactattataaacaaaaattgacattttaaattcatttaataaatgatgtat |
36547400 |
T |
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