View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4929-Insertion-7 (Length: 795)
Name: NF4929-Insertion-7
Description: NF4929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4929-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 600; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 8 - 794
Target Start/End: Complemental strand, 34480158 - 34479371
Alignment:
| Q |
8 |
acttcagcaagtattgtggctttatccatctaaagagttatgaaacattgacccacaaaatcaaattcaacacattttatagttttgaattgcttaaata |
107 |
Q |
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| T |
34480158 |
acttcagcaagtattgtggctttatccatctaaagagttatgaaacattgacccacaaaatcaaattcaacacattttatagttttgaattgcttaaata |
34480059 |
T |
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| Q |
108 |
attttcttttgtaaggnnnnnnnnnttgttggtctctataaaatcatgatctatcggcattagcttgtatacaattacaagcaacatagacaactgaatt |
207 |
Q |
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| T |
34480058 |
attttcttttgtaaggaaaaaaa--tggttggtctctataaaatcatgatctatcagcattagcatgtatacaattacaagcaacatagacaactgaatt |
34479961 |
T |
|
| Q |
208 |
aaccacatatttgaacgtgataagtcatgtgtcgcacgggtgtacatagagtgcccgtccatgtattattactgtnnnnnnnnnnttattaaattttggt |
307 |
Q |
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| T |
34479960 |
aaccacatatttgaacgtgataagtcatgtgtcgcacgggtgtacatagagtggacgtccatgtattattactgtaaaaaaaaa-ttattaaattttggt |
34479862 |
T |
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| Q |
308 |
tttagtagaatacaacaaatgttcaaaaattaaccacatatttgaacttaatttagtcaagttgaatgatcctttggtaacattgtcttgaatcatttta |
407 |
Q |
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| T |
34479861 |
tttagtagaatacaacaaatgttcaaaaattaaccacatatttgaacttaatttagtcaagttgaatgatcctttggtaacattgtcttgaatcatttta |
34479762 |
T |
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| Q |
408 |
ataactgatgaagaaaccaacaactgagttgatttatc----aaggtggatgtagaataattataatattctaactagttttgattatgagatgcttaaa |
503 |
Q |
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| T |
34479761 |
ataactgatgaagaaaccaacaactgagttgatttatctatcaaggtggatgaagaataattataatattctaactagttttgattatgagatgcttaaa |
34479662 |
T |
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| Q |
504 |
acataaatacaatagtaataattgccccacatcaccattatataagttaggcaacaaataaagataagatggcggtgcaactaaaatagctcaagaaact |
603 |
Q |
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| T |
34479661 |
acataaatacaatagtaataattgccccacatcaccattatataagttaggcaacaaataaagataagatggcggtgcaactaaaatagctcaagaaact |
34479562 |
T |
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| Q |
604 |
gactgactatctcataccatccagaagaataaattaactggcatgtccacaacaaaacttgaaagcaatattttaatcaatttgattacaatgaaaatgn |
703 |
Q |
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| T |
34479561 |
gactgactgtgtcataccatccagaagaataaattaactggcatgtccacaacaaaacttgaaagcaatattttaatcaatttgattacaatgaaaatgt |
34479462 |
T |
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| Q |
704 |
nnnnnnnnnnnnnnnnnnnnnnnngacaaagacatcaaattaaaatacaccttgtcaaaattgacattagtgtttaatgttttatactttt |
794 |
Q |
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| T |
34479461 |
ttcttctcttttttcttttcctttgacaaagacatcaaattaaaatacaccttgtcaaaattgacattagtgtttaatgttttatactttt |
34479371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 644 - 700
Target Start/End: Complemental strand, 34489852 - 34489794
Alignment:
| Q |
644 |
gcatgtccacaacaaaacttgaaagca--atattttaatcaatttgattacaatgaaaa |
700 |
Q |
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| T |
34489852 |
gcatgtccacaacaaaactttaaagcaatatatcttaatcaatctgattgcaatgaaaa |
34489794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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